Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Taxonomic identity of four groups of Glandirana rugosa (Anura, Ranidae) in Japan revealed by the complete mitochondrial genome sequence analysis.

ABSTRACT: The Japanese Glandirana rugosa phylogenetically consists of four groups. However, the taxonomic identity of these groups still remains unclear. We determined the complete mitogenome sequences of the four groups of G. rugosa. The mitogenomes were 17,394-17,781 bp in length. The phylogenetic analysis clearly showed that the genus Glandirana is monophyletic and that the four groups of G. rugosa are separated into two clusters: one cluster represents G. rugosa, the other cluster may represent a different species.

SUBMITTER: Mochizuki M

PROVIDER: S-EPMC7671700 | biostudies-literature | 2020 Nov

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Taxonomic identity of four groups of Glandirana rugosa (Anura, Ranidae) in Japan revealed by the complete mitochondrial genome sequence analysis.

Mochizuki Masatake M Nakamura Yoriko Y Nakamura Masahisa M

Mitochondrial DNA. Part B, Resources 20201111 3

The Japanese Glandirana rugosa phylogenetically consists of four groups. However, the taxonomic identity of these groups still remains unclear. We determined the complete mitogenome sequences of the four groups of G. rugosa. The mitogenomes were 17,394-17,781 bp in length. The phylogenetic analysis clearly showed that the genus Glandirana is monophyletic and that the four groups of G. rugosa are separated into two clusters: one cluster represents G. rugosa, the ...[more]

PMID: 33367075

Similar Datasets

Sequencing and analysis of the complete mitochondrial genome of Rugosa emeljanovi (Anura: Ranidae).

Project description:In this study, the complete mitogenome sequence of Rugosa emeljanovi (Anura: Ranidae) is first determined using long PCR. It is a circular molecule of 17,733 bp in length (GenBank accession no. KU641020). Similar to the typical mtDNA of amphibians, the complete mtDNA sequence of R. emeljanovi contained 2 rRNA genes (12S rRNA and 16S rRNA), 22 tRNA genes, 13 protein-coding genes (PCGs), and a control region (D-loop). The nucleotide composition was 28.1% A, 26.8% C, 14.8% G, and 30.3% T. Mitochondrial genome analyses based on the NJ method yield phylogenetic trees, including the 13 already reported Ranidae family frogs. The molecular data presented here provide a useful tool for systematic analyses of genus Rugosa and Glandirana.

| S-EPMC7801011 | biostudies-literature

The complete mitochondrial genome of Rana coreana (Anura: Ranidae).

Project description:Rana coreana is a brown frog species native to the Korean Peninsula. We characterized the complete mitochondrial genome of the species. The mitochondrial genome sequence of R. coreana is 22,262 bp and comprises 13 protein-coding genes, two ribosomal RNA (rRNA) genes, 22 transfer RNA (tRNA) genes, and two control regions (CRs). The CR duplication and gene organization were identical to those observed in Rana kunyuensis and Rana amurensis. A total of 13 protein-coding genes were used to examine the phylogenetic relationships between this species and the genus Rana. R. coreana living on the Korean Peninsula, formed a cluster with R. kunyuensis and R. amurensis, with R. coreana showing the closest phylogenetic affinity for R. kunyuensis.

| S-EPMC10332202 | biostudies-literature

The complete mitogenome of the Amolops jinjiangensis (Anura: Ranidae).

Project description:We describe the mitochondrial genome sequence of a torrent frog, Amolops jinjiangensis. The mitogenome was extracted and assembled for the first time by restriction site-associated DNA sequencing (RAD-seq). The total length is 17,780 bp, containing 13 protein-coding genes (PCGs), two ribosomal RNA genes, 22 transfer RNA genes, and one control region. The gene rearrangement was detected as the W-OL-ANCY gene cluster which consisted with several published Amolops mitogenomes. The phylogenetic tree was constructed based on 13 protein-coding genes of A. jinjiangensis and 11 closely related species by Bayesian analyses.

| S-EPMC8344257 | biostudies-literature

The complete mitochondrial genome of Odorrana grahami (Anura: Ranidae).

Project description:The mitochondrial genome of the Disckless-fingered Odorous Frog, Odorrana grahami (Anura: Ranidae), was sequenced using high-throughput sequencing technology. The genome length was 17864 bp, including 22 tRNA genes, 13 protein-coding genes, 2 rRNA genes and 1 control region (D-loop). The AT content of the mitochondrial genome was 55.9%. The composition of mitochondrial genome of O. grahami is similar to that of other species of the genus Odorrana. Phylogenetic analysis of the mitochondrial genomes of six congeners shows that O. grahami is sister to O. margaretae, but the analysis using 16S rRNA gene of additional congeners do not resolve their relationships.

| S-EPMC8158192 | biostudies-literature

The complete mitochondrial genome of the Odorrana schmackeri (Anura, Ranidae).

Project description:The complete mitochondrial genome of O. schmackeri has been sequenced and characterized in this study. The mitogenome is a circular molecule of 18 610 bp in length, containing 13 protein-coding genes (PCGs), two ribosomal RNA (rRNA) genes, 21 transfer RNA (tRNA) genes and a non-coding D-loop region (control region). Its gene arrangements are identical to the typical neobatrachian-type except for the loss of tRNAHis gene. Our data provide a useful resource for the phylogenetic studies of genus Odorrana.

| S-EPMC7800420 | biostudies-literature

The complete mitochondrial genome sequence of Rana dabieshanensis (Anura: Ranidae).

Project description:Rana dabieshanensis is a species of frog within the family Ranidae. In this study, we assembled a complete mitochondrial genome (mito-genome) for R. dabieshanensis by high-throughput sequencing technology. It is 18,291 bp and includes 13 protein-coding genes, 22 tRNA genes, two rRNA genes and one control region. The nucleotide composition is A: 27.0%, T: 28.6%, C: 29.3% and G: 15.2%. Two overlaps among the 13 protein-coding genes were found: ATP8/ATP6, ND4L/ND4. The study of phylogenetic analysis based on complete mitochondrial genome showed that there was close genetic relationship between R. dabieshanensis and R. omeimontis and it is useful for systematic analyses of genus Rana.

| S-EPMC8291061 | biostudies-literature

The complete mitogenome of the granular torrent frog, Amolops granulosus (Anura: Ranidae).

Project description:We obtained the complete mitochondrial genome of Amolops granulosus, which was 17,785 bp in length and it contained the 37 typical mitochondrial genes: 2 ribosomal RNAs, 22 transfer RNAs (tRNAs), 13 protein-coding genes (PCGs), and 1 control region (CR). The hotspot of gene arrangement was ranged as 'W-gap-OL-gap-A-N-gap-C-Y' which consisted with most published Amolops mitogenomes. Our phylogenetic results suggested the gene arrangement of 'WANCY' region can facilitate to distinguish the Amolops species as an efficient genetic marker.

| S-EPMC7706465 | biostudies-literature

Sequencing and analysis of the complete mitochondrial genome of Rana amurensis (Anura: Ranidae).

Project description:In this study, the complete mitogenome sequence of Rana amurensis (Anura: Ranidae) is determined using long PCR. It is a circular molecule of 20,571 bp in length (GenBank accession no. MF370348). The complete mtDNA sequence of R. amurensis contained 2 rRNA genes (12S rRNA and 16S rRNA), 22 tRNA genes, 13 protein-coding genes (PCGs) and 2 control regions (D-loops). The nucleotide composition was 28.6% A, 26.8% C, 14.0% G and 30.6% T. Mitochondrial genome analyses based on NJ method yield phylogenetic trees, including that 20 reported family Ranidae frogs. These molecular data presented here provide a useful tool for systematic analyses of genus Rana.

| S-EPMC7800792 | biostudies-literature

The complete mitochondrial genome of Rana wuyiensis (Anura, Ranidae) and its phylogenetic analysis.

Project description:The complete mitochondrial genome (mitogenome) of Rana wuyiensis (Anura, Ranidae) was sequenced and annotated. The circular complete mitogenome was 17,779 bp in length (OL467321) and constituted of 37 genes including 13 protein-coding genes (PCGs), 22 transfer RNAs (tRNAs), and two ribosomal RNAs (rRNAs), and a D-loop region. The result of Bayesian phylogenetic analysis indicated that R. wuyiensis exhibits a close relationship with R. johnsi. R. wuyiensis was recently discovered and therefore holds a lot of potential for future research studies. Our study added a new mitochondrial data and provided valuable reference material to the taxonomy of Rana.

| S-EPMC9037220 | biostudies-literature

Complete mitochondrial genome of the American bullfrog in Korea, Lithobates catesbeianus (Anura: Ranidae).

Project description:The complete mitochondrial (mt) genome of Lithobates catesbeianus was sequenced and characterized. The circular mt genome was constituted of of 37 genes (13 protein-coding genes, 22 transfer RNAs, and 2 ribosomal RNAs) and a non-coding region (NCR). Phylogenetic analysis based on the full mt genome sequences confirmed that among the genus Lithobates, L. catesbeianus Korea is included in a monophyletic group with L. catesbeianus China, but not with either L. catesbeianus Japan or L. catesbeianus Canada. This is the first completed mt genome from L. catesbeianus Korea, which provide data for further study of phylogeny in Lithobates spp. that have been introduced into a number of different countries originally from North America.

| S-EPMC7748749 | biostudies-literature