Seeking the Source of Catalytic Efficiency of Lindane Dehydrochlorinase, LinA.

ABSTRACT: Herein we present the results of an in-depth simulation study of LinA and its two variants. In our analysis, we combined the exploration of protein conformational dynamics with and without bound substrates (hexachlorocyclohexane (HCH) isomers) performed using molecular dynamics simulation followed by the extraction of the most frequently visited conformations and their characteristics with a detailed description of the interactions taking place in the active site between the respective HCH molecule and the first shell residues by using symmetry-adapted perturbation theory (SAPT) calculations. A detailed investigation of the conformational space of LinA substates has been accompanied by description of enzymatic catalytic steps carried out using a hybrid quantum mechanics/molecular mechanics

SUBMITTER: Sowinska A 

PROVIDER: S-EPMC7681783 | biostudies-literature | 2020 Nov

REPOSITORIES: biostudies-literature