Dataset Information

The complete chloroplast genome of Sesbania cannabina.

ABSTRACT: Sesbania cannabina is an annual plant widely distributed in south China, southeast Asia, and Australia. In the present study, we sequenced the complete chloroplast genome of S. cannabina, which is 153,978 bp in length and it is characterized by a typical quadripartite structure composed of a LSC (85,406 bp) and SSC (19,112 bp) region interspersed by a pair of 23,730 bp IR regions. It encodes 125 genes, comprising 81 protein-coding genes, 8 rRNA genes, and 36 tRNA genes. Phylogenetic analysis confirmed the position of S. cannabina within the subfamily Papilionoideae.

SUBMITTER: Tan W

PROVIDER: S-EPMC7706799 | biostudies-literature | 2019 Sep

REPOSITORIES: biostudies-literature

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The complete chloroplast genome of Sesbania cannabina.

Tan Wei W Gao Han H Yu Xiaolei X Zhang Huanyu H Jiang Weiling W Tian Xiaoxuan X

Mitochondrial DNA. Part B, Resources 20190910 2

Sesbania cannabina is an annual plant widely distributed in south China, southeast Asia, and Australia. In the present study, we sequenced the complete chloroplast genome of S. cannabina, which is 153,978 bp in length and it is characterized by a typical quadripartite structure composed of a LSC (85,406 bp) and SSC (19,112 bp) region interspersed by a pair of 23,730 bp IR regions. It encodes 125 genes, comprising 81 protein-coding genes, 8 rRNA genes, and 36 tRNA genes. Phylogeneti ...[more]

PMID: 33365808

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Project description:Symbiotic nitrogen fixation between legumes and rhizobia makes a great contribution to the terrestrial ecosystem. The successful symbiosis between the partners mainly depends on the nod and nif genes in rhizobia, while the specific symbiosis is mainly determined by the structure of Nod factors and the corresponding secretion systems (type III secretion system; T3SS), etc. These symbiosis genes are usually located on symbiotic plasmids or a chromosomal symbiotic island, both could be transferred interspecies. In our previous studies, Sesbania cannabina-nodulating rhizobia across the world were classified into 16 species of four genera and all the strains, especially those of Rhizobium spp., harboured extraordinarily highly conserved symbiosis genes, suggesting that horizontal transfer of symbiosis genes might have happened among them. In order to learn the genomic basis of diversification of rhizobia under the selection of host specificity, we performed this study to compare the complete genome sequences of four Rhizobium strains associated with S. cannabina, YTUBH007, YTUZZ027, YTUHZ044 and YTUHZ045. Their complete genomes were sequenced and assembled at the replicon level. Each strain represents a different species according to the average nucleotide identity (ANI) values calculated using the whole-genome sequences; furthermore, except for YTUBH007, which was classified as Rhizobium binae, the remaining three strains were identified as new candidate species. A single symbiotic plasmid sized 345-402 kb containing complete nod, nif, fix, T3SS and conjugal transfer genes was detected in each strain. The high ANI and amino acid identity (AAI) values, as well as the close phylogenetic relationships among the entire symbiotic plasmid sequences, indicate that they have the same origin and the entire plasmid has been transferred among different Rhizobium species. These results indicate that S. cannabina stringently selects a certain symbiosis gene background of the rhizobia for nodulation, which might have forced the symbiosis genes to transfer from some introduced rhizobia to the related native or local-condition-adapted bacteria. The existence of almost complete conjugal transfer related elements, but not the gene virD, indicated that the self-transfer of the symbiotic plasmid in these rhizobial strains may be realized via a virD-independent pathway or through another unidentified gene. This study provides insight for the better understanding of high-frequency symbiotic plasmid transfer, host-specific nodulation and the host shift for rhizobia.

Dataset Information

The complete chloroplast genome of Sesbania cannabina.

Publications

The complete chloroplast genome of <i>Sesbania cannabina</i>.

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