Dataset Information

The complete mitochondrial genome of an Atlantic Ocean Shortfin Mako Shark, Isurus oxyrinchus.

ABSTRACT: We report the first complete mitochondrial genome of a shortfin mako shark from the Atlantic Ocean. The genome had 16,700 base pairs and contained 13 protein-coding genes, 2 rRNA genes, 22 tRNA genes, and a non-coding D-loop. There were 81 individual differences compared to the published mitochondrial genome of a shortfin mako from the Pacific Ocean, with most variability found in protein coding genes, especially ND5, ND3, and ND1. These highly variable genes may be useful population markers in future studies, and availability of a second mitogenome will assist with future, genome-scale studies of this IUCN Endangered species.

SUBMITTER: Gorman J

PROVIDER: S-EPMC7707436 | biostudies-literature | 2019 Oct

REPOSITORIES: biostudies-literature

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The complete mitochondrial genome of an Atlantic Ocean Shortfin Mako Shark, <i>Isurus oxyrinchus</i>.

Gorman Jonathan J Marra Nicholas N Shivji Mahmood S MS Stanhope Michael J MJ

Mitochondrial DNA. Part B, Resources 20191018 2

We report the first complete mitochondrial genome of a shortfin mako shark from the Atlantic Ocean. The genome had 16,700 base pairs and contained 13 protein-coding genes, 2 rRNA genes, 22 tRNA genes, and a non-coding D-loop. There were 81 individual differences compared to the published mitochondrial genome of a shortfin mako from the Pacific Ocean, with most variability found in protein coding genes, especially ND5, ND3, and ND1. These highly variable genes may be useful population markers in ...[more]

PMID: 33366122

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Project description:The aim of this study was to reveal potential relationship between the main flow field around a shortfin mako shark and the surface morphology of shark skin. Firstly, a numerical simulation using the large eddy simulation (LES) method was conducted to obtain the main flow field around a smooth shark model. Then, the surface morphology characteristics of a shark (Isurus oxyrinchus) at different positions were characterized by scanning electron microscope (SEM), which showed that the morphology, riblet size, and density of scales at different positions on the shark were significantly different. At positions where the surfaces face into the water flow direction (i.e., nose and leading edge of fins), the scales were flat and round, with a lower density, and the pressure or wall shear stress (WSS) was greater. Scales with three longitudinal riblets ending in three tips were found on the middle and trailing edges of the first dorsal fin and caudal fin, where water flow states progress from transitional to turbulent. The ranges of the ratio of riblet depth to spacing (RD/RS) in the anterior zone, middle zone and posterior zone of the shark were 0.05-0.17, 0.08-0.23, and 0.32-0.33, respectively. The riblet angle generally followed the flow direction, but it varied across different areas of the body. The turbulence intensity increased gradually across the first dorsal fin, pectoral fin, caudal fin, and the shark body overall. In summary, it was found that the microstructure riblets on the shark skin surface, generally thought to be drag reduction structures, were only located in transitional and turbulent regions at the middle and trailing edge of the shark body and fin surfaces, and there were almost no microstructural grooves in the laminar flow regions along the leading edge. These findings can provide design guidance for engineering applications of bionic riblet surfaces. Riblets placed in transitional and fully turbulent regions can be used to effectively reduce drag. The riblet direction should be consistent with the direction of flow.

Dataset Information

The complete mitochondrial genome of an Atlantic Ocean Shortfin Mako Shark, Isurus oxyrinchus.

Publications

The complete mitochondrial genome of an Atlantic Ocean Shortfin Mako Shark, <i>Isurus oxyrinchus</i>.

Similar Datasets

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