Browse
Submit Data
Databases
API
Help

Dataset Information

63 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The mitochondrial genome of Medetera sp. (Diptera: Dolichopodidae).

ABSTRACT: The long-legged fly Medetera sp. (Genbank accession number: MN604695) belongs to the subfamily Medeterinae of Dolichopodidae. The mitogenome of Medetera sp. was sequenced, the first representative of the mitogenome of the subfamily. The mitogenome is 14,740 bp totally, consisting of 13 protein-coding genes, two rRNAs, and 22 transfer RNAs. All genes have similar locations and strands with that of other published species of Dolichopodidae. The nucleotide composition biases toward A and T, which together made up 67.6％ of the entirety. Bayesian inference analysis strongly supported the monophyly of Dolichopodidae. It suggested that subfamily Medeterinae is the sister group of subfamily Rhaphiinae.

SUBMITTER: Qilemoge

PROVIDER: S-EPMC7720944 | biostudies-literature | 2019 Dec

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

The mitochondrial genome of Medetera sp. (Diptera: Dolichopodidae).

Qilemoge Lin Chen C Fatima Noor N Yang Ding D

Mitochondrial DNA. Part B, Resources 20191209 1

The long-legged fly Medetera sp. (Genbank accession number: MN604695) belongs to the subfamily Medeterinae of Dolichopodidae. The mitogenome of Medetera sp. was sequenced, the first representative of the mitogenome of the subfamily. The mitogenome is 14,740 bp totally, consisting of 13 protein-coding genes, two rRNAs, and 22 transfer RNAs. All genes have similar locations and strands with that of other published species of Dolichopodidae. The nucleotide composition biases toward A ...[more]

PMID: 33366428

Similar Datasets

The mitochondrial genome of Argyra pingwuensis (Diptera: Dolichopodidae).

Project description:The long-legged fly Argyra pingwuenesis Qilemoge, Wang et Yang (Genbank accession number: MK905737) belongs to the subfamily Diaphorinae of Dolichopodidae. The mitogenome of A. pingwuenesis was sequenced, the first representative of the mitogenome of the subfamily. The mitogenome is 15,859 bp long, consisting of 13 protein-coding genes, 2 rRNAs, and 22 transfer RNAs. All genes have the similar locations and strands with that of other published species of Dolichopodidae. The nucleotide composition biases toward A and T, which together made up 74.6% of the entirety. Bayesian inference analysis strongly supported the monophyly of Dolichopodidae. It suggested that subfamily Diaphorinae is the sister group of subfamily Rhaphiinae.

| S-EPMC7687435 | biostudies-literature

The mitochondrial genome of Asyndetus clavipes (Diptera: Dolichopodidae).

Project description:The long-legged fly Asyndetus clavipes belongs to the subfamily Diaphorinae of Dolichopodidae. The mitogenome of A. clavipes was sequenced, the first representative complete mitogenome from this subfamily. This mitogenome is 15,385 bp in size, includes 13 protein-coding genes, 22 transfer RNAs, and two ribosomal RNAs. All genes have the same location and coding strand as in other published species of Dolichopodidae. Nucleotide composition is biased toward A and T, which together made up 78.6% of the entire genome. Bayesian inference strongly supported the monophyly of Empidoidea, Empididae and Dolichopodidae, with the phylogenetic relationships within Empidoidea: ((Dolichopodinae + Neurigoninae) + Diaphorinae) + ((Trichopezinae + (Empidinae + Oreogetoninae)) + Ocydromiinae).

| S-EPMC8057078 | biostudies-literature

The mitochondrial genome of Gymnopternus bomiensis (Diptera: Dolichopodidae).

Project description:The mitochondrial genome of Gymnopternus bomiensis (Yang, 1996) (Diptera: Dolichopodidae) has been reported in this study. This is the first mitogenome representative of Gymnopternus. The sequenced region is determined to be 15,212 bp, including 13 protein-coding genes, 2 ribosomal RNAs, 22 transfer RNAs, and a partial A-T rich region. The nucleotide composition biased toward A and T, and the overall A + T% was up to 74.0％. Additionally, we reconstructed the phylogeny of relative species using 13 PCRs and two rRNAs. Bayesian inference analysis strongly supported the monophyly of Dolichopodinae. It also suggested that Gymnopternus is the sister group of Dolichopus.

| S-EPMC9267409 | biostudies-literature

The mitochondrial genome of Xanthochlorus tibetensis (Diptera: Dolichopodidae).

Project description:The long-legged fly Xanthochlorus tibetensis belongs to the subfamily Xanthochlorinae of Dolichopodidae. The mitogenome of X. tibetensis was sequenced, it is the first representative complete mitogenome from this subfamily. This mitogenome is 15,580 bp in size, includes 13 protein-coding genes, 22 transfer RNAs, and two ribosomal RNAs. All genes have the same location and coding strand as in other published species of Dolichopodidae. Nucleotide composition is biased toward A and T, which together made up 77.6% of the entire genome. Bayesian inference strongly supported the monophyly of Empidoidea, Empididae and Dolichopodidae, with the phylogenetic relationships within Empidoidea: ((Dolichopodinae + Xanthochlorinae) + Neurigoninae) + ((Trichopezinae + (Empidinae + Oreogetoninae)) + Ocydromiinae).

| S-EPMC7889179 | biostudies-literature

The mitochondrial genome of Hercostomus brevipilosus (Diptera: Dolichopodidae).

Project description:The long-legged fly Hercostomus brevipilosus (Genbank accession number: MN840034) belongs to the subfamily Dolichopodinae of Dolichopodidae. The mitogenome of H. brevipilosus was sequenced, the first representative of the mitogenome of the genus Hercostomus. The mitogenome is 15,019 bp totally, consisting of 13 protein-coding genes, two rRNAs and 22 transfer RNAs. All genes have similar locations and strands with that of other published species of Dolichopodidae. The nucleotide composition biases toward A and T, which together made up 73.9％ of the entirety. Bayesian inference analysis strongly supported the monophyly of Dolichopodidae and Dolichopodinae. It suggested that Hercostomus is the sister group of Dolichopus.

| S-EPMC7748520 | biostudies-literature

The complete mitochondrial genome of Dolichopus galeatus Loew, 1871 (Diptera: Dolichopodidae)

Project description: Not available

| S-EPMC10552610 | biostudies-literature

The complete mitochondrial genome of Neurigona zhejiangensis (Diptera: Dolichopodidae).

Project description:The long-legged fly Neurigona zhejiangensis belongs to the subfamily Neurigoninae of Dolichopodidae. The mitogenome (GenBank accession number: MT921956) of N. zhejiangensis was sequenced, the first representative complete mitogenome from this subfamily. The complete mitogenome is 17,141 bp, includes 13 protein-coding genes, 2 rRNAs, and 22 transfer RNAs. All genes have the same location and coding strand as in other published species of Dolichopodidae. Nucleotide composition is biased toward A and T, which together made up 77.3% of the entire genome. Bayesian inference strongly supported the monophyly of Empidoidea, Empididae and Dolichopodidae, with the phylogenetic relationships within Empidoidea: (Dolichopodinae + Neurigoninae) + ((Empidinae + (Trichopezinae + Oreogetoninae)) + Ocydromiinae).

| S-EPMC7819116 | biostudies-literature

The mitochondrial genome of Lichtwardtia dentalis Zhang, Masunaga et Yang, 2009 (Diptera: Dolichopodidae).

Project description:The long-legged fly Lichtwardtia dentalis Zhang, Masunaga et Yang, 2009 belongs to the subfamily Dolichopodinae of Dolichopodidae. The newly sequenced mitogenome of L. dentalis is a new representative of the subfamily. The nearly complete mitogenome is 15,124 bp in length, consisting of 13 protein-coding genes (PCGs), 2 ribosomal RNA genes (rRNAs), and 22 transfer RNA genes (tRNAs). All genes have similar locations and encoding directions with that of other published mitogenomes of Dolichopodidae. The nucleotide composition biases toward A and T with the overall A + T % is 73.9%. All protein-coding genes initiate with standard start codon ATN except COI and NAD1, and TAA/TAG are conventionally used as stop codons. All tRNAs, ranging from 62 to 71 bp, have a clover-leaf structure. Based on the result of the phylogenetic analysis, Dolichopodidae and Empididae were monophyletic, and the relationships among subfamilies of Dolichopodidae were Diaphorinae + (Peloropeodinae + (Xanthochlorinae + (Medeterinae + Dolichopodinae))). The monophyly of the subfamily Dolichopodinae and the sister relationship between Dolichopus and Lichtwardtia were also strongly supported.

| S-EPMC8266247 | biostudies-literature

The mitochondrial genome of Anthalia sp. (Diptera: Empididae).

Project description:The dance fly Anthalia sp. belongs to the subfamily Ocydromiinae of Empididae. The mitogenome (GenBank accession number: MT483943) of Anthalia sp. was sequenced, the new representative of the mitogenome of the subfamily. The nearly complete mitogenome is 15,142 bp totally, consisting of 13 protein-coding genes, 2 rRNAs, and 22 transfer RNAs. All genes have the similar locations and strands with that of other published species of Empididae. The nucleotide composition biases toward A and T, which together made up 78.6% of the entirety. Bayesian inference analysis strongly supported the monophyly of Empidoidea, Empididae, and Dolichopodidae. It is clear that the phylogenetic relationship within Empidoidea: (Dolichopodinae + Neurigoninae) + ((Empidinae + (Trichopezinae + Oreogetoninae)) + Ocydromiinae) in this study.

| S-EPMC7782628 | biostudies-literature

The mitochondrial genome of Oreogeton sp. (Diptera: Empididae).

Project description:The dance fly Oreogeton sp. belongs to the subfamily Oreogetoninae of Empididae. The mitogenome of Oreogeton sp. (GenBank accession number: MK639348) was sequenced, the first representative of the mitogenome of the subfamily. The nearly complete mitogenome is 15,718 bp totally, consisting of 13 protein-coding genes, two rRNAs, and 22 transfer RNAs. All genes have the similar locations and strands with that of other published species of Empididae. The nucleotide composition biases toward A and T, which together made up 77.2％of the entirety. Bayesian inference analysis strongly supported the monophyly of Empidoidea, Empididae, and Dolichopodidae. This result also suggested that Oreogetoninae was assigned to the sister group to the clade that consists of Trichopezinae and Clinocerinae, and then Empidinae is the sister to the clade that contains Oreogetoninae, Trichopezinae, and Clinocerinae.

| S-EPMC7687517 | biostudies-literature