Browse
Submit Data
Databases
API
Help

Dataset Information

42 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The complete chloroplast genome of Primula helodoxa, a species endemic to China.

ABSTRACT: Primula helodoxa Balf.f. is a species endemic to southeastern China distributed in Tengchong county of Yunnan Province. Here is the first time to report the complete chloroplast genome sequence of P. helodoxa. The complete chloroplast genome was 151,909 bp in length, containing a large single-copy (LSC) region of 83192 bp, a small single-copy (SSC) region of 17,797 bp, and a pair of inverted repeats (IRs) regions of 25,460 bp. There are 137 genes in total, 91 protein-coding genes, eight rRNA genes, and 38 transfer RNA genes. The phylogenetic tree showed relative relationship of P. helodoxa and P. chrysochlora.

SUBMITTER: Zhang L

PROVIDER: S-EPMC7748870 | biostudies-literature | 2019 Dec

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

The complete chloroplast genome of Primula helodoxa, a species endemic to China.

Zhang Li L Chen Xiong X Huang Yuan Y Wu Zhikun Z

Mitochondrial DNA. Part B, Resources 20191212 1

Primula helodoxa Balf.f. is a species endemic to southeastern China distributed in Tengchong county of Yunnan Province. Here is the first time to report the complete chloroplast genome sequence of P. helodoxa. The complete chloroplast genome was 151,909 bp in length, containing a large single-copy (LSC) region of 83192 bp, a small single-copy (SSC) region of 17,797 bp, and a pair of inverted repeats (IRs) regions of 25,460 bp. There are 137 genes in total, 91 protein-coding genes, ...[more]

PMID: 33366483

Similar Datasets

The complete chloroplast genome of an endangered endemic herb species in China, Primula filchnerae (Primulaceae).

Project description:Primula filchnerae (Primulaceae) is an endangered endemic herb species in China. In this study, we characterized the complete chloroplast genome of P. filchnerae based on next generation sequencing (NGS). The chloroplast genome of P. filchnerae was 151,547 bp in size, containing a large single-copy (LSC) region of 82, 662 bp and a small single-copy (SSC) region of 17,749 bp. These two regions were separated by a pair of inverted repeat regions (IRs), each of 25,568 bp. A total of 130 functional genes were encoded, consisted of 86 protein-coding genes, 36 tRNA genes, and eight rRNA genes.

| S-EPMC7706512 | biostudies-literature

The complete chloroplast genome sequence of Primula filchnerae Knuth (Primulaceae), an endangered species in China.

Project description:Primula filchnerae Knuth is an endangered species endemic to China. Its complete chloroplast genome was reported in this study for the first time. The whole chloroplast genome was 151, 443 base pairs in length with 131 genes, including 66 protein-coding genes, 37 tRNAs, and 4 rRNAs. In addition, the accD was inferred to be a pseudogene. Phylogenetic analysis showed a sister relationship between P. filchnerae and P. sinensis Sabine ex Lindl.

| S-EPMC7781951 | biostudies-literature

The complete chloroplast genome of Primula tsiangii W. W. Smith (Primulaceae): a karst endemic primrose in Southwest China.

Project description:Primula tsiangii W. W. Smith is a karst endemic species in Southwest China. Here, we report the complete chloroplast genome of P. tsiangii. The chloroplast (cp) genome was determined to be 153,281 bp and the GC contents was 37.2%. The sequence includes a large single copy (LSC) region of 84,524 bp, a small single copy (SSC) region of 17,357 bp, and two separated inverted regions of 25,700 bp each. It contains 127 unique genes, including 82 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. This is the first report of cp genomes for karst endemic primrose, and will be useful for the genetic diversity of karst plants.

| S-EPMC7706616 | biostudies-literature

The complete chloroplast genome of Primula odontocalyx, a heterostylous species.

Project description:Primula odontocalyx (Franch.) Pax (1905) is a perennial herb of the genus Primula in Primulaceae with heterostyly and ornamental value. Here, the chloroplast genome of P. odontocalyx was sequenced, assembled, and annotated. The complete chloroplast genome was a closed-circular molecule of 151,738 bp in length, containing a large single-copy region (LSC) of 83,817 bp, a small single-copy region (SSC) of 17,529 bp, and two inverted repeat (IR) regions of 25,196 bp. A total of 115 unique genes were annotated in the whole cp genome, including 81 protein-coding genes, 4 rRNA genes, and 30 tRNA genes. Phylogenetic analysis confirmed the close relationship between P. odontocalyx and Primula moupinensis, and both species belong to Sect. Petiolares Pax.

| S-EPMC9673793 | biostudies-literature

The complete chloroplast genome of Vaccinium duclouxii, an endemic species in China.

Project description:Vaccinium duclouxii is an endemic species in China, which is distributed in Sichuan and Yunnan province of China. The chloroplast (cp) genome of V. duclouxii is 168,953 bp in size containing 123 unique genes, including 8 rRNA genes, 38 tRNA genes, and 77 protein-coding genes (PCGs). Phylogenetic analysis exhibited that V. duclouxii and V. macrocarpon were most related to Arbutus unedo.

| S-EPMC7687571 | biostudies-literature

The complete chloroplast genome of Primula bulleyana, a popular ornamental species.

Project description:Primula bulleyana is a popular ornamental species, with high commercial values. Here, we reported the first chloroplast genome of P. bulleyana. The complete chloroplast genome is 150978 bp, containing a large single-copy (LSC) region of 82873 bp, a small single-copy (SSC) region of 17,741 bp, and a pair of inverted repeats (IRs) regions of 25,182 bp. In total, there are 142 genes, 92 protein-coding genes, 8 rRNA genes, and 38 tRNA genes are annotated in the whole cp genome, including 119 unique genes, 82 unique CDSs, 29 unique tRNAs, and 4 unique rRNAs. The overall GC content of the cp genome is 37.1%. The phylogenetic tree shows that close relationships among P. bulleyana and Primula stenodonta.

| S-EPMC7707575 | biostudies-literature

The complete chloroplast genome of Melanosciadium pimpinelloideum (Apiaceae), an endemic species of China.

Project description:Melanosciadium pimpinelloideum de Boiss. is an endemic species of China. Here, the complete chloroplast genome of M. pimpinelloideum is determined. The whole genome size is 164,431 bp in length, composed of a pair of inverted repeats (IRs) of 35,211 bp, a large single-copy region (LSC) of 76,444 bp and a small single-copy region (SSC) of 17,565 bp. The genome contains 136 genes, including 91 protein-coding genes, 37 transfer RNA genes, and 8 ribosomal RNA genes. Phylogenetic analysis with the reported chloroplast genomes showed that M. pimpinelloideum and P. rhomboidea var. tenuiloba formed a well-supported clade, which nested in Angelica species. Logically, the result corroborated the previous treatment of P. rhomboidea var. tenuiloba.

| S-EPMC7782880 | biostudies-literature

The complete chloroplast genome of Zelkova schneideriana (Rosales: Ulmaceae), an Endangered species endemic to China.

Project description:Zelkova schneideriana Hand.-Mazz. (Ulmaceae) is an endangered species endemic to China. In this study, we reported its complete chloroplast (cp) genome based on Illumina pair-end sequencing. The whole genome was 158,999 bp long, consisting of a pair of inverted repeat (IR) regions of 26,427 bp, a large single copy (LSC) region of 87,397 bp and a small single copy (SSC) region of 18,748 bp. The cp genome contained 133 genes, including 88 protein-coding genes (80 PCG species), 37 tRNA genes (30 tRNA species), and eight rRNA genes (4 rRNA species). The overall G+C content of the whole genome was 35.6%, and the corresponding values of the LSC, SSC, and IR regions were 33.0, 28.3, and 42.4%, respectively. The maximum likelihood phylogenetic analysis of 25 selected chloroplast genomes demonstrated that Z. schneideriana was closely related to Ulmus macrocarpa and Ulmus pumila.

| S-EPMC7800157 | biostudies-literature

The complete chloroplast genome of Ormosia nuda (fabaceae), an endemic species in China.

Project description:Ormosia nuda is a legume species endemic to China. The chloroplast genome (plastome) of this species was assembled in this study. The total plastome size is 173,789 bp in length, containing a large single-copy (LSC) region of 73,847 bp, a small single-copy (SSC) region of 18,744 bp, and two inverted repeat (IR) regions of 40,599 bp which have expanded about 15 kb into LSC. The plastome encodes a total of 111 unique genes, including 77 protein-coding, 30 tRNA, and 4 rRNA genes. Phylogenetic analysis well resolved that O. nuda clustered with O. xylocarpa and O. emarginata. The plastome of O. nuda will provide informative genomic resources for further phylogenetic studies.

| S-EPMC8218860 | biostudies-literature

The complete chloroplast genome of Sauvagesia rhodoleuca, an endangered species endemic to China.

Project description:Sauvagesia rhodoleuca is an endangered and national key protected species of China, with limited natural distribution in Guangdong and Guangxi, Southern China. Here we reported the first complete chloroplast genome of S. rhodoleuca using genome skimming approach. The chloroplast genome is 157,300 bp in length, with a large single-copy region (LSC) of 86,021 bp and a small single-copy region (SSC) of 18,137 bp separated by a pair of inverted repeats (IRs) of 26,571 bp. It encodes 112 unique genes, including 80 protein-coding genes, 28 transfer RNA genes, and four ribosomal RNA genes. Phylogenetic analysis results strongly supported that S. rhodoleuca was closely related to Medusagyne oppositifolia.

| S-EPMC8284140 | biostudies-literature