ARPIR: automatic RNA-Seq pipelines with interactive report.

ABSTRACT:

Background

RNA-Seq is an increasing used methodology to study either coding and non-coding RNA expression. There are many software tools available for each phase of the RNA-Seq analysis and each of them uses different algorithms. Furthermore, the analysis consists of several steps regarding alignment (primary-analysis), quantification, differential analysis (secondary-analysis) and any tertiary-analysis and can therefore be time-consuming to deal with each step separately, in addition to requiring a computer knowledge. For this reason, the development of an automated pipeline that allows the entire analysis to be managed through a single initial command and that is easy to use even for those without computer skills can be useful. Faced with the vast availability of RNA-Seq analysis

SUBMITTER: Spinozzi G 

PROVIDER: S-EPMC7751108 | biostudies-literature | 2020 Dec

REPOSITORIES: biostudies-literature