Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The complete mitochondrial genome sequence of Crenidorsum turpiniae (Hemiptera: Aleyrodidae).

ABSTRACT: We determined the complete mitochondrial genomes of Crenidorsum turpiniae, a new record whitefly pest on tea-tree. The mitogenome of C. turpiniae is 15,427 bp long and consists of 13 protein-coding genes, 22 tRNA genes, two rRNA genes and a putative control region (GenBank: MN934936). The whole base composition of the heavy strand for A, C, G and T is 30%, 12.24%, 15.82% and 41.87%, respectively, with an AT bias (-16%). All PCGs use ATN as start codon (N, any nucleotide), except for NAD6 uses TTG. Most of the PCGs use TAA as a stop codon. The length of 16SrRNA and 12SrRNA gene are 1277 bp and 768 bp, respectively. Phylogenetic analysis indicated that C. turpiniae and Tetraleurodes acaciae had a closer genetic relationship.

SUBMITTER: Li S

PROVIDER: S-EPMC7781941 | biostudies-literature | 2020 Dec

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

The complete mitochondrial genome sequence of Crenidorsum turpiniae (Hemiptera: Aleyrodidae).

Li Shuai S Wang Wei-Rui WR Zhou Yu-Feng YF Zhong Li-Kun LK Jiang Yan Y Meng Ze-Hong ZH

Mitochondrial DNA. Part B, Resources 20201224 4

We determined the complete mitochondrial genomes of Crenidorsum turpiniae, a new record whitefly pest on tea-tree. The mitogenome of C. turpiniae is 15,427 bp long and consists of 13 protein-coding genes, 22 tRNA genes, two rRNA genes and a putative control region (GenBank: MN934936). The whole base composition of the heavy strand for A, C, G and T is 30%, 12.24%, 15.82% and 41.87%, respectively, with an AT bias (-16%). All PCGs use ATN as start codon (N, any nucleotide), except fo ...[more]

PMID: 33458246

Similar Datasets

The complete mitochondrial genome and phylogenetic analysis of Pealius mori (Hemiptera: Aleyrodidae)

Project description: Not available

| S-EPMC11229734 | biostudies-literature

A complete mitochondrial DNA genome of whitefly species (Hemiptera: Aleyrodidae) from Litchi chinensis.

Project description:A novel complete mitochondrial genome (mitogenome) of whitefly species, collected from Litchi chinensis at Fujian province of China (hereafter whitefly_Litchi chinensis _China) (GenBank accession number: MH999477), was described in this study. The mitogenome of whitefly_Litchi chinensis _China is 15,360 bp in length and contains 13 protein-coding genes, 21 transfer RNAs, 2 ribosomal RNAs and a non-coding AT-rich region (D-loop). The arrangement of mitochondrial genes of whitefly_Litchi chinensis_China are identical with Aleurochiton aceris, but remarkably different from the mitogenomes of the other whitefly genus. Most protein-coding genes (PCGs) start with ATN, except for nad2, cox2 and atp6 genes starting with TTG, GTG, and TTG, respectively; 10 of the 13 PCGs use the typical stop codon TAN, whereas cox1, and cox2 stop with a single T. Phylogenetic analyses based on 13 PCGs support the close relationship of the sample with Aleurochiton aceris, which would provide us further insights on the taxonomy and phylogeny of Aleyrodidae.

| S-EPMC6816494 | biostudies-literature

Complete mitochondrial genome of the whitefly Aleyrodes shizuokensis Kuwana (Hemiptera: Aleyrodidae), new record from Chinese mainland.

Project description:The complete mitochondrial genome was determined for the whitefly Aleyrodes shizuokensis (Hemiptera: Aleyrodidae), the first record from Chinese mainland. The mitochondrial genome is 16,687 bp in length and contains 13 protein-coding genes (PCGs), 22 transfer RNAs, and two ribosomal RNAs. The overall base composition is 33.8% A, 47.0% T, 12.2% G, and 7.0% C. All PCGs start with ATN codon. COX1 ends with a T, and the other 12 PCGs use TAA or TAG as the stop codon. Gene arrangement of the 13 PCGs is identical to that of the giant whitefly Aleurodicus dugesii and greenhouse whitefly Trialeurodes vaporariorum. The resultant Bayesian inference and maximum-likelihood trees based on the sequence data of 13 PCGs support its close relationship with sugarcane whitefly Neomaskellia andropogonis.

| S-EPMC7872568 | biostudies-literature

Complete Mitochondrial Genome of the Citrus Spiny Whitefly Aleurocanthus spiniferus (Quaintance) (Hemiptera: Aleyrodidae): Implications for the Phylogeny of Whiteflies.

Project description:In this study, we sequenced the complete mitochondrial genome (15,220 bp) of the citrus spiny whitefly, Aleurocanthus spiniferus (Quaintance), a well-known pest from the superfamily Aleyrodidae. The A. spiniferus mitogenome contains 36 genes, including 13 protein-coding genes (PCGs), 21 transfer RNAs (tRNA), two ribosomal RNAs (rRNA) and a large non-coding region (control region, CR). Like most whiteflies, the A. spiniferus mitogenome had a large degree of rearrangement due to translocation of the nad3-trnG-cox3 gene cluster. The 13 PCGs initiated with ATN and generally terminated with TAA, although some used TAG or T as stop codons; atp6 showed the highest evolutionary rate, whereas cox2 appeared to have the lowest rate. The A. spiniferus mitogenome had 21 tRNAs with a typical cloverleaf secondary structure composed of four arms. Modeling of the two rRNA genes indicated that their secondary structure was similar to that of other insects. The CR of A. spiniferus was 920 bp and mapped between the nad3-trnG-cox3 and trnI-trnM gene clusters. One potential stem-loop structure and five tandem repeats were identified in the CR. Phylogenetic relationships of 11 species from the Aleyrodidae were analyzed based on the deduced amino acid sequences of the 13 PCGs and evolutionary characteristics were explored. Species with more genetic rearrangements were generally more evolved within the Aleyrodidae.

| S-EPMC4995055 | biostudies-literature

Complete mitochondrial genome sequence of Empoascanara dwalata (Hemiptera: Cicadellidae: Typhlocybinae).

Project description:In this study, the complete mitochondrial genome of the leafhopper species Empoascanara dwalata (Hemiptera: Cicadellidae: Typhlocybinae) was sequenced and annotated, and the sequence is available in the GenBank with accession number: MT350235. The circular mitogenome with 15,271 bp in length, including 13 protein-coding genes (PCGs), 22 tRNA genes, two rRNA genes, and one AT-rich region. The nucleotide composition is as follows: A (41.7%), T (34.7%), G (10.6%), and C (13.0%). 11 PCGs have ATN as the start codon, except for atp8 and nad5 genes have TTG. The conventional termination codons (TAA or TAG) occur in 11 PCGs, while cox2 and nad5 use incomplete codon (T--) as termination codon. Phylogenetic analysis using 13 PCGs showed that E. dwalata was clustered with three other Typhlocybine species, which was consistent with the conventional classification.

| S-EPMC7510757 | biostudies-literature

The complete mitochondrial genome sequence of Diaphorina citri (Hemiptera: Psyllidae).

Project description:The first complete mitochondrial genome (mitogenome) sequence of Asian citrus psyllid, Diaphorina citri (Hemiptera: Psyllidae) from Guangzhou, China, is presented. The circular mitogenome is 14,996 bp in length with an A + T content of 74.5%, and contains 13 protein-coding genes (PCGs), 22 tRNA genes (tRNAs), two rRNA genes and an AT-rich control region. Synteny was identical to the ancestral insect mitogenomes. All PCGs start with 'ATN' codons. Eleven PCGs use the complete termination codons ('TAA' or 'TAG'), while the remaining two (cox2 and nad5) use a single 'T' as the stop codon. All tRNAs have the typical cloverleaf structure, except for trnTrp which lacks the variable arm and trnSer (AGN) which lacks the dihydrouridine arm. A phylogenetic tree, including 12 members of Sternorrhyncha, was constructed based on the 13 PCGs sequences. The resulting phylogenetic tree matched the established taxonomic scheme based on morphology.

| S-EPMC7871819 | biostudies-literature

The complete mitochondrial genome sequence of Aquarius elongatus (Hemiptera: Gerridae).

Project description:In this study, we report the complete mitochondrial genome of Aquarius elongatus. The mitogenome was 15,370 bp in length, comprising 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes, and a control region. Maximum-likelihood (ML) phylogenetic tree indicated that Aquarius elongatus has a close relationship with Aquarius paludum. In general, this study provides meaningful genetic information for A. elongatus.

| S-EPMC7995909 | biostudies-literature

The complete mitochondrial genome sequence of the corn planthopper, Peregrinus maidis (Hemiptera: Fulgoroidea).

Project description:In this study, we analyzed the complete mitochondrial genome sequence of the corn planthopper, Peregrinus maidis. The complete mitogenome sequence of P. maidis was observed to be a circular molecule 16,279 bp long and consisting of 13 protein-coding genes (PCG), 2 ribosomal RNA (rRNA) genes and 22 transfer RNA (tRNA) genes (GenBank accession no. MG049917). The nucleotide composition is biased toward adenine and thymine (77.8% A + T). The A + T-rich region was found between rrnS and trnI, and this entire region was 1596 bp long.

| S-EPMC7800928 | biostudies-literature

Complete mitochondrial genome sequence of the global invasive species Stictocephala bisonia (Hemiptera: Membracidae: Smiliinae).

Project description:Stictocephala bisonia Kopp et Yonke, 1977, an invasive alien species colonizing Taibai County, Shaanxi Province, China, belongs to the subfamily Smiliinae. The total mitogenome sequence size is 15,803 bp in length, consists of 13 protein-coding genes, 22 transfer RNA genes, two ribosomal RNA genes and one control region, and shows a positive AT skew. Phylogenetic analysis results strongly support that treehoppers (Membracidae and Aetalionidae) are monophyletic, and indicate that Smiliinae could be proposed as a separate family.

| S-EPMC8118396 | biostudies-literature

The architecture and complete sequence of mitochondrial genome of an assassin bug Agriosphodrus dohrni (Hemiptera: Reduviidae).

Project description:The 16, 470 bp nucleotide sequence of the mitochondrial genome (mitogenome) of an assassin bug from the reduviid subfamily Harpactorinae, Agriosphodrus dohrni, has been revealed. The entire genome encodes for two ribosomal RNA genes (rrnL and rrnS), 22 transfer RNA (tRNA) genes, 13 protein-coding genes, and a control region. The nucleotide composition is biased toward adenine and thymine (A+T = 72.2%). Comparative analysis with two other reduviid species Triatoma dimidiata and Valentia hoffmanni, exhibited highly conserved genome architectures including genome contents, gene order, nucleotide composition, codon usage, amino acid composition, as well as genome asymmetry. All protein-coding genes use standard mitochondrial initiation codons (methionine and isoleucine), except that nad1 starts with GTG. All tRNAs have the classic clover-leaf structure, except that the dihydrouridine (DHU) arm of tRNA(Ser(AGN)) forms a simple loop. Secondary structure comparisons of the two mitochondrial ribosomal subunits among sequenced assassin bugs show that the sequence and structure of rrnL is more conservative than that of rrnS. The presence of structural elements in the control region is also discussed, with emphasis on their implications in the regulation of replication and/or transcription of the reduviid mitogenome. The phylogenetic analyses indicated that within Reduviidae, Harpactorinae is a sister group to the Salyavatinae + Triatominae clade.

| S-EPMC3133887 | biostudies-literature