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Molecular identification and phylogenetic analysis of a Callosciurus notatus complete mitogenome from Peninsular Malaysia.

ABSTRACT: The mitogenome of a plantain squirrel, Callosciurus notatus, collected from Bukit Tarek Forest Reserve (Extension), Selangor, Malaysia was sequenced using BGISEQ-500RS technology. The 16,582 bp mitogenome consists of 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and 1 control region. A phylogenetic and BLASTn analysis against other available datasets showed that the mitogenome matched with 99.49% similarity to a previously published C. notatus mitogenome from Peninsular Malaysia. However, it also diverged by nearly 8% (92.24% match) from a second previously published mitogenome for the same species, sampled in East Kalimantan, Indonesia. This suggests a difference in landscape features between both localities might affect its genetic connectivity.

SUBMITTER: Jahari PNS 

PROVIDER: S-EPMC7782351 | biostudies-literature | 2020 Aug

REPOSITORIES: biostudies-literature

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Molecular identification and phylogenetic analysis of a <i>Callosciurus notatus</i> complete mitogenome from Peninsular Malaysia.

Jahari Puteri Nur Syahzanani PNS   Mohd Azman Shahfiz S   Munian Kaviarasu K   Ahmad Ruzman Nor Hazwani NH   Shamsir Mohd Shahir MS   Richter Stine R SR   Gilbert M Thomas P MTP   Mohd Salleh Faezah F  

Mitochondrial DNA. Part B, Resources 20200826 3

The mitogenome of a plantain squirrel, <i>Callosciurus notatus</i>, collected from Bukit Tarek Forest Reserve (Extension), Selangor, Malaysia was sequenced using BGISEQ-500RS technology. The 16,582 bp mitogenome consists of 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and 1 control region. A phylogenetic and BLASTn analysis against other available datasets showed that the mitogenome matched with 99.49% similarity to a previously published <i>C. notatus</i> mitogenome fr  ...[more]

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