Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The complete mitochondrial genome of Jesogammarus (Jesogammarus) hinumensis (Crustacea: Amphipoda: Anisogammaridae).

ABSTRACT: We determined the mitogenome sequence of Jesogammarus (Jesogammarus) hinumensis Morino, 1993, which is the first complete mitogenome sequence in the family Anisogammaridae Bousfield, 1977. The complete mitogenome of J. (J.) hinumensis was 15,186 bp in length with the typical 13 protein-coding genes (PCGs), 22 transfer RNAs (tRNAs), two ribosomal RNAs (rRNAs), and a control region (CR). The gene order of J. (J.) hinumensis was in accordance with the typical pan-crustacean ground pattern. A maximum-likelihood tree constructed using 25 eumalacostracan mitogenomes confirmed that J. (J.) hinumensis is most closely related to the family Micruropodidae, and supported the monophyly of the superfamily Gammaroidea.

SUBMITTER: Lee CW

PROVIDER: S-EPMC7782921 | biostudies-literature | 2020 Jun

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

The complete mitochondrial genome of Jesogammarus (Jesogammarus) hinumensis (Crustacea: Amphipoda: Anisogammaridae).

Lee Chi-Woo CW Tomikawa Ko K Min Gi-Sik GS

Mitochondrial DNA. Part B, Resources 20200612 3

We determined the mitogenome sequence of Jesogammarus (Jesogammarus) hinumensis Morino, 1993, which is the first complete mitogenome sequence in the family Anisogammaridae Bousfield, 1977. The complete mitogenome of J. (J.) hinumensis was 15,186 bp in length with the typical 13 protein-coding genes (PCGs), 22 transfer RNAs (tRNAs), two ribosomal RNAs (rRNAs), and a control region (CR). The gene order of J. (J.) hinumensis was in acco ...[more]

PMID: 33457817

Similar Datasets

Complete mitochondrial genome of Pseudocrangonyx joolaei (Crustacea: Amphipoda: Pseudocrangonyctidae).

Project description:The complete mitochondrial genome of a subterranean pseudocrangonyctid amphipod, Pseudocrangonyx joolaei, was determined in this paper. The complete mitogenome of P. joolaei was 14,814 bp in length with the typical 13 protein-coding genes, 22 transfer RNAs, two ribosomal RNAs, and a control region (CR). The gene order of P. joolaei was unique in that the CR was an inversion, and the gene order of Pseudocrangonyx was not concordant when compared to that of P. daejeonensis, a subterranean amphipod found in Korea. A maximum-likelihood tree, constructed based on 26 eumalacostracan mitogenomes, confirmed that P. joolaei supported monophyly in the family Pseudocrangonyctidae and is most closely related to the superfamily Crangonyctoidea.

| S-EPMC7782889 | biostudies-literature

The complete mitochondrial genome of Pseudocrangonyx daejeonensis (Crustacea: Amphipoda: Pseudocrangonyctidae).

Project description:The complete mitogenome sequence of a subterranean pseudocrangonyctid amphipod, Pseudocrangonyx daejeonensis, was determined. The complete mitogenome of P. daejeonensis was 15,069 bp in length with the typical 13 protein-coding genes (PCGs), 22 transfer RNAs (tRNAs), 2 ribosomal RNAs (rRNAs), and a control region (CR). This is the first complete mitogenome sequence in the family Pseudocrangonyctidae. Interestingly, gene arrangements of most amphipod species were almost identical to the typical pan-crustacean ground pattern, whereas two PCGs, both of rRNAs and CR were translocated in P. daejeonensis. A maximum-likelihood tree, constructed based on 30 eumalacostracan mitogenomes, confirmed that P. daejeonensis is closely related to the crangonyctid Stygobromus indentatus and S. tenuis potomacus and supported the monophyly of the superfamily Crangonyctoidea.

| S-EPMC7799821 | biostudies-literature

The complete mitochondrial genome of the estuarine amphipod Grandidierella osakaensis (Crustacea: Amphipoda).

Project description:The complete mitochondrial genome sequence of an estuarine amphipod Grandidierella osakaensis was determined. The mitochondrial genome was 14,658 bp in length with 37 mitochondrial genes (13 protein-coding genes [PCGs], 2 ribosomal RNAs [rRNAs], and 22 transfer RNAs [tRNAs]). The order of PCGs of G. osakaensis was identical to those of other two Grandidierella species. A maximum likelihood-based phylogenetic analysis showed that G. osakaensis formed a monophyletic clade with the other two Grandidierella species within the infraorder Corophiida. The mitochondrial genome sequence obtained in this study provides useful information for further phylogenetic and ecological studies.

| S-EPMC7717501 | biostudies-literature

The complete mitochondrial genome of Haustorioides koreanus Jo, 1988 (Crustacea: Amphipoda: Dogielinotidae).

Project description:The mitochondrial genome of a dogielinotid amphipod, Haustorioides koreanus, was completely sequenced for the first time. The total mitogenome length of H. koreanus was 14,839 bp with 13 protein-coding genes, two ribosomal RNA genes, and 22 transfer RNA genes. The phylogenetic tree confirmed that H. koreanus belongs to the families Hyalellidae in the same clade and to the suborder Senticaudata within Amphipoda. This is the first record of the complete mitochondrial genome sequence of the family Dogielinotidae.

| S-EPMC7748501 | biostudies-literature

The complete mitochondrial genome of freshwater gammarid Gammarus nipponensis (Crustacea: Amphipoda: Gammaridae).

Project description:This study presents the complete mitochondrial genome sequence of Gammarus nipponensis, a freshwater crustacean found in the western regions of Honshu, Shikoku and Kyushu in Japan. The entire genome is 16,429 bp in length, encoding a standard set of 13 protein-coding genes, two ribosomal RNA genes and 22 transfer RNA genes, as well as the putative control regions. The mitochondrial genome of G. nipponensis is characterized by a high concentration of A and T nucleotides (67.1%). Notably, the mitogenome contains long TATTTTA repeats in the control region 2 at 686 bp long. This newly available genome information will be useful for studying the evolutionary relationships within the genus Gammarus and for understanding diversification among G. nipponensis populations.

| S-EPMC10993753 | biostudies-literature

The complete mitochondrial genome of the deep-sea amphipod Eurythenes magellanicus (Crustacea: Amphipoda: Lysianassidae).

Project description:The complete mitochondrial genome of the deep sea amphipod Eurythenes magellanicus was determined in this paper. This molecular was 14,988 bp in length, and contained the typical 13 protein coding genes (PCGs), 22 transfer RNAs (tRNAs), two ribosomal RNAs (rRNAs) and one control region (CR). The gene order of E. magellanicus was identical to that from E. maldoror, a deep sea amphipod inhabiting in a deeper habitat than E. magellanicus. A maximum-likelihood tree based on the 13 PCGs from 25 amphipods indicated that E. magellanicus and E. maldoror were closely related and the origin of deep sea amphipods was not monophyletic.

| S-EPMC7748488 | biostudies-literature

The complete mitochondrial genome of Cyphocaris challengeri (Amphipoda: Cyphocarididae).

Project description:The amphipod Cyphocaris challengeri is a globally distributed, highly abundant species of zooplankton. Here, we report the complete mitochondrial genome of C. challengeri obtained using the Illumina sequencing platform from a specimen collected from Puget Sound, Washington. The mitogenome is a circular DNA molecule with a size of 14,338 bp and 26.7% GC content, with 13 protein-encoding genes, 2 rRNAs, and 22 tRNAs annotated. A maximum likelihood phylogenetic analysis including C. challengeri and all other available mitogenomes from Amphipoda places our mitogenome firmly within the Lysianassoidea superfamily, as expected. The newly described mitochondrial genome of C. challengeri fills a gap in valuable reference data for detecting this organism using molecular methods such as environmental DNA.

| S-EPMC10621271 | biostudies-literature

The complete mitogenome of freshwater gammarid Grandidierella taihuensis (Crustacea: Amphipoda).

Project description:The freshwater gammarid Grandidierella taihuensis is an important composition of benthic community. In this study, the complete mitogenome sequences of G. taihuensis are determined using next-generation and PacBio long-read sequencing. The mitogenome of G. taihuensis is 15,099 bp in size, and consisted of 13 protein-coding genes, two ribosomal RNA genes, 22 tRNA genes, and a putative control region. Gene arrangement is as same as that of G. rubroantennata. The base composition of the entire mitogenome showed a conspicuous A + T bias of 69.4%. The mitogenome data produced in this study provides a useful resource for future evolutionary and ecological studies.

| S-EPMC8043560 | biostudies-literature

The complete mitochondrial genomes of two talitrid amphipods, Platorchestia japonica and P. parapacifica (Crustacea, Amphipoda).

Project description:In this paper, we determined the complete mitochondrial genome (mitogenome) sequences of two talitrid amphipods, Platorchestia japonica and P. parapacifica. The complete mitogenomes of P. japonica and P. parapacifica were 14,780 and 14,787 bp in length, respectively, with the typical 13 protein coding genes (PCGs), 22 transfer RNAs (tRNAs), two ribosomal RNAs (rRNAs) and a control region (CR). In the gene order analysis, two PCGs (nad3 and nad6) were rearranged in comparison to the typical pan-crustacean ground pattern. A maximum-likelihood tree, constructed based on 31 eumalacostracan mitogenomes, confirmed that P. japonica and P. parapacifica (Talitridae) were closely related to Parhyale hawaiensis (Hyalidae), and supports the monophyly of the superfamily Talitroidea.

| S-EPMC7799624 | biostudies-literature

Leucothoe vaderotti, a new Atlantic Leucothoe (Crustacea, Amphipoda) belonging to the "spinicarpa-clade" (Crustacea, Amphipoda).

Project description:Within the international IceAGE project (Icelandic marine Animals: Genetics and Ecology) some leucothoid amphipods (Crustacea) were collected, among them a rather small new species, belonging to the "Leucothoe spinicarpa-clade."

| S-EPMC5799779 | biostudies-literature