Dataset Information

Chloroplast genome of silverleaf nightshade (Solanum elaeagnifolium Cav.), a Weed of National Significance in Australia.

ABSTRACT: Solanum elaeagnifolium Cav. is a widely distributed weed and recognized as a Weed of National Significance in Australia. This study sequenced the chloroplast (cp) genome of S. elaeagnifolium, which is 155,049 bp in length, including a large single-copy region at 85, 426 bp, a small single-copy region at 18,419 bp and two inverted repeats at 25,602 bp. A total of 130 genes were annotated. The phylogeny among the S. elaeagnifolium and 42 Solanum chloroplast genomes suggested S. elaeagnifolium is closely related to Solanum species from the section of Melongena.

SUBMITTER: Zhu X

PROVIDER: S-EPMC7782970 | biostudies-literature | 2020 Jun

REPOSITORIES: biostudies-literature

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Chloroplast genome of silverleaf nightshade (Solanum elaeagnifolium Cav.), a Weed of National Significance in Australia.

Zhu Xiaocheng X Wang Aisuo A Wu Hanwen H Lin Jianmin J

Mitochondrial DNA. Part B, Resources 20200617 3

Solanum elaeagnifolium Cav. is a widely distributed weed and recognized as a Weed of National Significance in Australia. This study sequenced the chloroplast (cp) genome of S. elaeagnifolium, which is 155,049 bp in length, including a large single-copy region at 85, 426 bp, a small single-copy region at 18,419 bp and two inverted repeats at 25,602 bp. A total of 130 genes were annotated. The phylogeny among the S. elaeagnifolium and 42 Solanum chloroplast genom ...[more]

PMID: 33457834

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Project description:Natural products received much attention as an environmentally beneficial solution for pest management. Therefore, the extracts of invasive silverleaf nightshade (Solanum elaeagnifolium Cav.) weeds using their berries parts (seeds, peels and mucilage) supported by bioassay-guided fractionation were tested against both the greater wax moth (Galleria mellonella) and Erwinia carotovora pv. carotovora causes of the blackleg of potatoes. The seeds and peels of S. elaeagnifolium were successively extracted by maceration using dichloromethane (DCM), ethyl acetate (EtOAc), and ethanol (EtOH), respectively. While, its mucilage was extracted using EtOAc. The successive EtOH extract of the plant seeds had promising inhibition efficacy and the best minimal inhibition concentration (MIC) of 50 µg/ml against E. Carotovora amongst other extracts (DCM and EtOAc of the plant berries parts). Depending on dose response activity, EtOH extract had G. mellonella larval mortality and pupal duration rates (LC50; 198.30 and LC95; 1294.73 µg/ml), respectively. Additionally, this EtOH extract of seeds was fractionated using preparative TLC to three characteristic bands. The insecticidal and bacterial activities of these isolated bands (SEA, SEB, and SEC) were evaluated at a dose of 100 µg/ml, causing mortality by 48.48, 62.63 and 92.93% (G. mellonella larvae) and inhibition by 15.22, 0.00 and 31.66 mm (E. carotovora), respectively. Moreover, the separated major three bands were tentatively identified using LC-ESI-MS analysis revealing the presence of two phenolic acids; chlorogenic acid (SEA) and dicaffeoyl quinic acid (SEB) in addition to one steroidal saponin (SEC) annotated as borassoside E or yamoscin. Finally, the plant seeds' successive EtOH extract as well as its active constituents, exhibited potential broad-spectrum activity and the ability to participate in future pest management initiatives. A field study is also recommended to validate its bio-efficacy against selected pests and to develop its formulations.

Project description:BackgroundSolanum elaeagnifolium, an invasive weed of the Solanaceae family, is poorly studied although it poses a significant threat to crops. Here the analysis of the transcriptome of S. elaeagnifolium is presented, as a means to explore the biology of this species and to identify genes related to its adaptation to environmental stress. One of the basic mechanisms by which plants respond to environmental stress is through the synthesis of specific secondary metabolites that protect the plant from herbivores and microorganisms, or serve as signaling molecules. One important such group of secondary metabolites are terpenes.ResultsBy next-generation sequencing, the flower/leaf transcriptome of S. elaeagnifolium was sequenced and de novo assembled into 75,618 unigenes. Among the unigenes identified, several corresponded to genes involved in terpene biosynthesis; these included terpene synthases (TPSs) and genes of the mevalonate (MVA) and the methylerythritol phosphate (MEP) pathways. Functional characterization of two of the TPSs showed that one produced the sesquiterpene (E)-caryophyllene and the second produced the monoterpene camphene. Analysis of wounded S. elaeagnifolium leaves has shown significant increase of the concentration of (E)-caryophyllene and geranyl linalool, two terpenes implicated in stress responses. The increased production of (E)-caryophyllene was matched to the induced expression of the corresponding TPS gene. Wounding also led to the increased expression of the putative 1-deoxy-D-xylulose-5-phosphate synthase 2 (DXS2) gene, a key enzyme of the MEP pathway, corroborating the overall increased output of terpene biosynthesis.ConclusionsThe reported S. elaeagnifolium de novo transcriptome provides a valuable sequence database that could facilitate study of this invasive weed and contribute to our understanding of the highly diverse Solanaceae family. Analysis of genes and pathways involved in the plant's interaction with the environment will help to elucidate the mechanisms that underly the intricate features of this unique Solanum species.

Dataset Information

Chloroplast genome of silverleaf nightshade (Solanum elaeagnifolium Cav.), a Weed of National Significance in Australia.

Publications

Chloroplast genome of silverleaf nightshade (<i>Solanum elaeagnifolium</i> Cav.), a Weed of National Significance in Australia.

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