Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The complete mitochondrial genome of Nysius fuscovittatus (Hemiptera: Lygaeidae).

ABSTRACT: Here, we sequenced and annotated the complete mitochondrial genome (mitogenome) of Nysius fuscovittatus (Hemiptera: Lygaeidae). This mitogenome was 14575 bp long, including 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), 2 ribosomal RNA unit genes (rrnL and rrnS), and a putative control region. All genes were arranged in the same order as that of most true bugs. Eleven PCGs started with a typical ATN, and the remaining two PCGs started with TTA (nad4L) and TTG (cox1). The N. fuscovittatus mitogenome with an A + T content of 76.42% showed a positive AT-skew (0.15) and a negative GC-skew (-0.15). With the exception of trnS1 that lacked the dihydrouridine arm, all tRNAs had a typical cloverleaf secondary structure. Phylogenetic analysis based on the concatenated nucleotide sequences of the 13 PCGs showed that N. fuscovittatus clustered with other three Lygaeidae species.

SUBMITTER: Cao Y

PROVIDER: S-EPMC7783115 | biostudies-literature | 2020 Oct

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

The complete mitochondrial genome of Nysius fuscovittatus (Hemiptera: Lygaeidae).

Cao Ya Y Wu Hui-Ting HT Li Min M Chen Wen-Ting WT Yuan Ming-Long ML

Mitochondrial DNA. Part B, Resources 20201005 3

Here, we sequenced and annotated the complete mitochondrial genome (mitogenome) of Nysius fuscovittatus (Hemiptera: Lygaeidae). This mitogenome was 14575 bp long, including 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), 2 ribosomal RNA unit genes (rrnL and rrnS), and a putative control region. All genes were arranged in the same order as that of most true bugs. Eleven PCGs started with a typical ATN, and the remaining two PCGs started with TTA (nad4L) and TTG ...[more]

PMID: 33458212

Similar Datasets

Complete mitochondrial genome sequencing of Oxycarenus laetus (Hemiptera: Lygaeidae) from two geographically distinct regions of India.

Project description:Oxycarenus laetus is a seed-sap sucking pest affecting a variety of crops, including cotton plants. Rising incidence and pesticide resistance by O. laetus have been reported from India and neighbouring countries. In this study, O. laetus samples were collected from Bhatinda and Coimbatore (India). Pure mtDNA was isolated and sequenced using Illumina MiSeq. Both the samples were found to be identical species (99.9%), and the complete genome was circular (15,672 bp), consisting of 13 PCGs, 2 rRNA, 23 tRNA genes, and a 962 bp control region. The mitogenome is 74.1% AT-rich, 0.11 AT, and - 0.19 GC skewed. All the genes had ATN as the start codon except cox1 (TTG), and an additional trnT was predicted. Nearly all tRNAs folded into the clover-leaf structure, except trnS1 and trnV. The intergenic space between trnH and nad4, considered as a synapomorphy of Lygaeoidea, was displaced. Two 5 bp motifs AATGA and ACCTA, two tandem repeats, and a few microsatellite sequences, were also found. The phylogenetic tree was constructed using 36 mitogenomes from 7 super-families of Hemiptera by employing rigorous bootstrapping and ML. Ours is the first study to sequence the complete mitogenome of O. laetus or any Oxycarenus species. The findings from this study would further help in the evolutionary studies of Lygaeidae.

| S-EPMC8660866 | biostudies-literature

The Complete Mitochondrial Genome of Ugyops sp. (Hemiptera: Delphacidae).

Project description:The complete mitochondrial genome (mitogenome) of Ugyops sp. (Hemiptera: Delphacidae) was sequenced, making it the first determined mitogenome from the subfamily Asiracinae, the basal clade of the family Delphacidae. The mitogenome was 15,259 bp in length with A + T content of 77.65% and contained 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), two ribosomal RNA genes (rRNAs), and a control region. The gene order was identical with that of the ancestral insect. The nucleotide composition analysis indicated that the whole mitogenome was strongly A-skewed (0.288) and highly C-skewed (-0.270). For PCGs on the J-strand, the AT skew was positive, and the GC skew was negative. All PCGs started with canonical ATN codons, except for cox1 and nad5, which used CTG and GTG as start codon, respectively. All tRNAs could fold into typical cloverleaf secondary structures, with the exception of trnS1 (AGN), in which the dihydrouridine arm was reduced to a simple loop. The control region included a poly-T stretch downstream of the small rRNA gene (rrnS), a subregion of higher A + T content and tandemly repeated sequence near trnI. The mitogenome of Ugyops sp. could be very helpful in exploring the diversity and evolution of mitogenomes in Delphacidae.

| S-EPMC6007673 | biostudies-literature

Complete mitochondrial genome of Liorhyssus hyalinus (Hemiptera: Rhopalidae).

Project description:The mitogenome of Liorhyssus hyalinus (Fabricius, 1794), decoded using next-generation sequencing, is the first report of Liorhyssus. The mitogenomic size was 16,355 bp with 41.99% A, 33.44% T, 14.53% C, and 10.05% G (OM328158). The phylogenetic tree, constructed with the amino acid sequences of 13 protein-coding genes, showed that L. hyalinus clustered together with other species in Rhopalidae, which supported the monophyly of each family in Pentatomomorpha.

| S-EPMC9364729 | biostudies-literature

Complete mitochondrial genome of Idioscopus nitidulus (Hemiptera: Cicadellidae).

Project description:The complete mitogenome of Idioscopus nitidulus (Cicadellidae) was sequenced. It comprises 15,287 base pairs (bp), including 13 protein-coding genes (PCGs), 2 rRNA genes, 22 tRNA genes and a control region. The phylogenetic analyses based on concatenated thirteen protein-coding genes of mitogenomes recover the monophyly of Auchenorrhyncha (Fulgoromorpha + Cicadomorpha) and Sternorrhyncha as a sister group to Auchenorrhyncha. The complete mitogenome sequence of Idioscopus nitidulusis available in the GenBank with accession number: KR024406.

| S-EPMC7800639 | biostudies-literature

The complete mitochondrial genome of Corythucha marmorata (Hemiptera: Tingidae).

Project description:The complete mitochondrial genome (mitogenome) of Corythucha marmorata has been sequenced and annotated. The entire mitogenome is a typical circle double-stranded DNA molecule of 15,635b p and consisted of 37 genes and a control region in the typical invertebrate mitochondrial gene arrangement. Phylogenetic analysis recovered the momophyly of Gerromorpha, Enicocephalomorpha and Cimicomorpha.

| S-EPMC7799590 | biostudies-literature

The complete mitochondrial genome of Entylia carinata (Hemiptera: Membracidae).

Project description:The complete mitochondrial genome of the treehopper species, Entylia carinata, was sequenced using the next-generation sequencing method. The completely assembled mitochondrial genome is 15,483 bp long. The genome follows the typical invertebrate mitochondrial gene arrangement, and includes 13 protein-coding genes, 22 tRNA genes, two rRNA genes and one A + T-rich region. Two tandem repeats were also identified within the A + T-rich region.

| S-EPMC7800129 | biostudies-literature

The complete mitochondrial genome of Macrosteles quadrilineatus (Hemiptera: Cicadellidae).

Project description:The complete mitochondrial genome of the Aster leafhopper Macrosteles quadrilineatus was sequenced using an Illumina-based next-generation sequencing approach. The genome is 16,626 bp in length with 78.0% AT content. It encodes 37 typical mitochondrial genes including 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes, and 1 A + T-rich region. Two tandem repeats were identified within the A + T-rich region. One tRNA gene rearrangement (trnW-trnC-trnY→trnC-trnW-trnY) was found between nd2 and cox1.

| S-EPMC7800883 | biostudies-literature

The complete mitochondrial genome of Brevicoryne brassicae (Hemiptera: Aphididae).

Project description:The mitochondrial genome of Brevicoryne brassicae (Hemiptera: Aphididae) was determined by Illumina paired-end sequencing. The genome size is 15,927 bp with 45.19% A, 39.03% T, 9.92% C and 5.86% G. It is encoded with 13 protein-coding genes, 22 transfer RNAs and two ribosome RNAs. The phylogenetic tree showed that B. brassicae clustered within clade of Aphididae, had a closer relationship with genus Diuraphis than the rest genera. This study provides important information for future study on the evolution, genetic and molecular biology of Brevicoryne.

| S-EPMC7995914 | biostudies-literature

The complete mitochondrial genome of Matsumuramata muiri (Hemiptera: Delphacidae).

Project description:In this study, we sequenced, annotated, and analyzed the complete mitochondrial genome of Matsumuramata muiri (Kirkaldy, 1907) (Hemiptera: Delphacidae). The mitogenome was 16,276 bp in length with high A + T content (76.28%), containing 13 protein-coding genes, 22 tRNA genes, two rRNA genes, and a control region. Gene rearrangement of M. muiri was congruent with those of some reported delphacid species. All protein-coding genes initiated with ATN, except for nad5, which used non-canonical start codon GTG. The predicted secondary structures of all tRNA genes were typical cloverleaf except for trnS1 (AGN), lacking the dihydrouridine (DHU) stem.

| S-EPMC8812750 | biostudies-literature

The complete mitochondrial genome of Unkanodes sapporonus (Hemiptera: Delphacidae).

Project description:In this study, we sequenced and analyzed the complete mitochondrial genome of Unkanodes sapporonus (Matsumura) (Hemiptera: Delphacidae). The mitogenome was 17,765 bp in length with A + T content of 75.87%, containing 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes, and a control region. All protein-coding genes started with ATN, except for nad5, which used noncanonical codon GTG. All tRNAs could fold into typical clover-leaf secondary structures, with the exception of trnS1 (AGN).

| S-EPMC7707802 | biostudies-literature