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Chloroplast genome of the wild tuber-bearing diploid potato relative Solanum chacoense.

ABSTRACT: Solanum chacoense is a wild tuber-bearing species belonging to Solanaceae family. The chloroplast genome of the species was completed by de novo assembly using a small amount of whole genome sequencing data. The genome is the circular DNA molecule with a length of 155,532?bp containing 159 predicted genes totally, including 105 protein-coding, 45 tRNA and eight rRNA genes. Maximum-likelihood phylogenetic analysis with 26 species in Solanaceae revealed that S. chacoense is the most closely grouped with S. commersonii.

SUBMITTER: Cho KS 

PROVIDER: S-EPMC7799535 | biostudies-literature | 2017 Dec

REPOSITORIES: biostudies-literature

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Chloroplast genome of the wild tuber-bearing diploid potato relative <i>Solanum chacoense</i>.

Cho Kwang-Soo KS   Choi Jang-Gyu JG   Cho Ji-Hong JH   Im Ju-Sung JS   Park Young-Eun YE   Hong Su-Young SY   Park Tae-Ho TH  

Mitochondrial DNA. Part B, Resources 20171207 2

<i>Solanum chacoense</i> is a wild tuber-bearing species belonging to Solanaceae family. The chloroplast genome of the species was completed by <i>de novo</i> assembly using a small amount of whole genome sequencing data. The genome is the circular DNA molecule with a length of 155,532 bp containing 159 predicted genes totally, including 105 protein-coding, 45 tRNA and eight rRNA genes. Maximum-likelihood phylogenetic analysis with 26 species in Solanaceae revealed that <i>S. chacoense</i> is th  ...[more]

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2022-09-28 | GSE138184 | GEO