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The complete chloroplast genome sequence of Solanum hougasii, one of the potato wild relative species.

ABSTRACT: Solanum hougasii is a wild tuber-bearing species belonging to the family Solanaceae. The complete chloroplast genome of S. hougasii was constituted by de novo assembly, using a small amount of whole genome sequencing data. The chloroplast genome of S. hougasii was a circular DNA molecule with a length of 155,549?bp and consisted of 85,990?bp of large single copy, 18,373?bp of small single copy, and 25,593?bp of a pair of inverted repeat regions. A total of 158 genes were annotated, including 105 protein-coding genes, 45 tRNA genes, and eight rRNA genes. Maximum likelihood phylogenetic analysis with 25 Solanaceae species revealed that S. hougasii is most closely grouped with S. tuberosum.

SUBMITTER: Cho KS 

PROVIDER: S-EPMC7800044 | biostudies-literature | 2018 Jul

REPOSITORIES: biostudies-literature

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The complete chloroplast genome sequence of <i>Solanum hougasii</i>, one of the potato wild relative species.

Cho Kwang-Soo KS   Cho Ji-Hong JH   Im Ju-Sung JS   Choi Jang-Gyu JG   Park Young-Eun YE   Jang Dong-Chil DC   Hong Su-Young SY   Park Tae-Ho TH  

Mitochondrial DNA. Part B, Resources 20180711 2

<i>Solanum hougasii</i> is a wild tuber-bearing species belonging to the family Solanaceae. The complete chloroplast genome of <i>S. hougasii</i> was constituted by <i>de novo</i> assembly, using a small amount of whole genome sequencing data. The chloroplast genome of <i>S. hougasii</i> was a circular DNA molecule with a length of 155,549 bp and consisted of 85,990 bp of large single copy, 18,373 bp of small single copy, and 25,593 bp of a pair of inverted repeat regions. A total of 158 genes w  ...[more]

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