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Complete mitochondrial genome of white-eyed parakeet (Psittacara leucophthalmus): the basal species to other Psittacara.

ABSTRACT: Recently resurrected Psittacara genus is one of the 19 recognized in parrot tribe Arini. The status of taxa within Psittacara remains controversial because some forms are treated as species or subspecies depending on authorities. Evolutionary history of Psittacara is also unclear because related phylogenetic clades contain taxa from distant and non-overlapping regions. However, the basal placement of Psittacara leucophthalmus with wide South American distribution suggests that other taxa with restricted range could emerge by a local split of larger population. We sequenced P. leucophthalmus mitogenome to increase the set of sequences required to determine taxonomic level and phylogeny of Psittacara taxa.

SUBMITTER: Urantowka AD

PROVIDER: S-EPMC7800280 | biostudies-literature | 2016 Nov

REPOSITORIES: biostudies-literature

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Complete mitochondrial genome of white-eyed parakeet (Psittacara leucophthalmus): the basal species to other Psittacara.

Urantówka Adam Dawid AD Mackiewicz Paweł P

Mitochondrial DNA. Part B, Resources 20161122 1

Recently resurrected Psittacara genus is one of the 19 recognized in parrot tribe Arini. The status of taxa within Psittacara remains controversial because some forms are treated as species or subspecies depending on authorities. Evolutionary history of Psittacara is also unclear because related phylogenetic clades contain taxa from distant and non-overlapping regions. However, the basal placement of Psittacara leucophthalmus with wide South American distributi ...[more]

PMID: 33490424

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Project description:BackgroundMitochondrial DNA-derived sequences have become popular markers for evolutionary studies, as their comparison may yield significant insights into the evolution of both the organisms and their genomes. From the more than 24,000 teleost species, only 254 complete mtDNA sequences are available (GenBank status on 06 Sep 2006). In this paper, we report the complete mitochondrial genome sequence of Asian arowana, a basal bonytongue fish species, which belongs to the order of Osteoglossiformes.ResultsThe complete mitochondrial genomic sequence (mtDNA) of Asian arowana (Scleropages formosus) was determined by using shotgun sequencing method. The length of Asian arowana mtDNA is ca. 16,650 bp (its variation is due to polymorphic repeats in the control region), containing 13 protein-coding genes, 22 tRNA and 2 rRNA genes. Twelve of the thirteen protein coding genes were found to be encoded by the heavy strand in the order typically observed for vertebrate mitochondrial genomes, whereas only nad6 was located on the light strand. An interesting feature of Asian arowana mitogenome is that two different repeat arrays were identified in the control region: a 37 bp tandem repeat at the 5' end and an AT-type dinucleotide microsatellite at the 3' end. Both repeats show polymorphism among the six individuals tested; moreover the former one is present in the mitochondrial genomes of several other teleost groups. The TACAT motif described earlier only from mammals and lungfish was found in the tandem repeat of several osteoglossid and eel species. Phylogenetic analysis of fish species representing Actinopterygii and Sarcopterygii taxa has shown that the Asian arowana is located near the baseline of the teleost tree, confirming its status among the ancestral teleost lineages.ConclusionThe mitogenome of Asian arowana is very similar to the typical vertebrate mitochondrial genome in terms of gene arrangements, codon usage and base composition. However its control region contains two different types of repeat units at both ends, an interesting feature that to our knowledge has never been reported before for other vertebrate mitochondrial control regions. Phylogenetic analysis using the complete mtDNA sequence of Asian arowana confirmed that it belongs to an ancestral teleost lineage.

Dataset Information

Complete mitochondrial genome of white-eyed parakeet (Psittacara leucophthalmus): the basal species to other Psittacara.

Publications

Complete mitochondrial genome of white-eyed parakeet (<i>Psittacara leucophthalmus</i>): the basal species to other <i>Psittacara</i>.

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