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Characterization of the whole plastid genome sequence of Abies chensiensis (Pinaceae), an endangered endemic conifer in China.

ABSTRACT: Abies chensiensis Van Tiegh. (Pinaceae) is a rare and endangered endemic conifer in China. In this study, using the Illumina sequencing platform, we firstly characterized its whole plastid genome sequence. Our study revealed that A. chensiensis have a typical plastid genome of 121,498 bp in length, comprised of a large single copy region of 76,484 bp, a small single copy region of 42,654 bp and two inverted repeat regions of 1180 bp. A total of 113 genes, 74 protein-coding genes, 35 tRNA, and 4 rRNA genes were identified. The phylogenetic analysis indicated that A. chensiensis was placed as a sister to the congeneric A. sibirica.

SUBMITTER: Liu ML 

PROVIDER: S-EPMC7800501 | biostudies-literature | 2018 Oct

REPOSITORIES: biostudies-literature

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Characterization of the whole plastid genome sequence of <i>Abies chensiensis</i> (Pinaceae), an endangered endemic conifer in China.

Liu Mi-Li ML   Bai Ji-Qing JQ   Dong Wan-Lin WL   Wang Ruo-Nan RN   Dong Peng-Bin PB   Wang Ning- N   Liu Hong-Yan HY   Fang Min-Feng MF  

Mitochondrial DNA. Part B, Resources 20181008 2

<i>Abies chensiensis</i> Van Tiegh. (Pinaceae) is a rare and endangered endemic conifer in China. In this study, using the Illumina sequencing platform, we firstly characterized its whole plastid genome sequence. Our study revealed that <i>A. chensiensis</i> have a typical plastid genome of 121,498 bp in length, comprised of a large single copy region of 76,484 bp, a small single copy region of 42,654 bp and two inverted repeat regions of 1180 bp. A total of 113 genes, 74 protein-coding genes, 3  ...[more]

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