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The complete chloroplast genome sequence of Oryza sativa aus-type variety Nagina-22 (Poaceae).

ABSTRACT: Rice (Oryza sativa) is the predominant staple food crop belonging to the Poaceae family. In this study, complete chloroplast genome sequence of O. sativa aus-type variety Nagina-22 was characterized through de novo assembly. The genome is a circular DNA molecule of 134,503?bp and has typical quadripartite structures including large single copy region (80,548?bp), small single copy region (12,347?bp), and a pair of inverted repeats (20,804?bp). A total of 120 genes were predicted in the genome, including 77 protein-coding genes, 8 open reading frame genes, 31 tRNA genes, and 4 rRNA genes. Phylogenetic analysis confirmed a close taxonomical relationship with O. sativa ssp. Indica species.

SUBMITTER: Yu Y 

PROVIDER: S-EPMC7800824 | biostudies-literature | 2017 Nov

REPOSITORIES: biostudies-literature

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The complete chloroplast genome sequence of <i>Oryza sativa aus</i>-type variety Nagina-22 (Poaceae).

Yu Yeisoo Y   Lee Hyun-Oh HO   Chin Joong Hyoun JH   Park Han Yong HY   Yoo Soo-Cheul SC  

Mitochondrial DNA. Part B, Resources 20171125 2

Rice (<i>Oryza sativa</i>) is the predominant staple food crop belonging to the Poaceae family. In this study, complete chloroplast genome sequence of <i>O. sativa aus</i>-type variety Nagina-22 was characterized through <i>de novo</i> assembly. The genome is a circular DNA molecule of 134,503 bp and has typical quadripartite structures including large single copy region (80,548 bp), small single copy region (12,347 bp), and a pair of inverted repeats (20,804 bp). A total of 120 genes were predi  ...[more]

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