Unknown

Dataset Information

0

Complete Genome Sequences of 12 Quinolone-Resistant Escherichia coli Strains Containing qnrS1 Based on Hybrid Assemblies.

ABSTRACT: In total, 12 quinolone-resistant Escherichia coli (QREC) strains containing qnrS1 were submitted to long-read sequencing using a FLO-MIN106 flow cell on a MinION device. The long reads were assembled with short reads (Illumina) and analyzed using the MOB-suite pipeline. Six of these QREC genome sequences were closed after hybrid assembly.

SUBMITTER: Kaspersen H 

PROVIDER: S-EPMC7844070 | biostudies-literature | 2021 Jan

REPOSITORIES: biostudies-literature

Json Xml
altmetric image

Publications

Complete Genome Sequences of 12 Quinolone-Resistant Escherichia coli Strains Containing <i>qnrS1</i> Based on Hybrid Assemblies.

Kaspersen Håkon H   Haverkamp Thomas H A THA   Ilag Hanna Karin HK   Øines Øivind Ø   Sekse Camilla C   Slettemeås Jannice Schau JS  

Microbiology resource announcements 20210128 4

In total, 12 quinolone-resistant <i>Escherichia coli</i> (QREC) strains containing <i>qnrS1</i> were submitted to long-read sequencing using a FLO-MIN106 flow cell on a MinION device. The long reads were assembled with short reads (Illumina) and analyzed using the MOB-suite pipeline. Six of these QREC genome sequences were closed after hybrid assembly. ...[more]

Similar Datasets

Unknown Occurrence and characterization of quinolone resistant Escherichia coli from Norwegian turkey meat and complete sequence of an IncX1 plasmid encoding qnrS1.
| S-EPMC6411123 | biostudies-literature
Unknown Complete Genome Sequences of Two Porcine Enterotoxigenic Escherichia coli Strains.
| S-EPMC5824013 | biostudies-literature
Unknown Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110.
| S-EPMC1681481 | biostudies-literature
Unknown Genome sequences of two closely related strains of Escherichia coli K-12 GM4792.
| S-EPMC4675052 | biostudies-literature
Unknown Complete sequence of a conjugative incn plasmid harboring blaKPC-2, blaSHV-12, and qnrS1 from an Escherichia coli sequence type 648 strain.
| S-EPMC4249370 | biostudies-literature
Unknown Complete Genome Sequences of the Escherichia coli Donor Strains ST18 and MFDpir.
| S-EPMC7645665 | biostudies-literature
Unknown Complete Genome Sequences of Two Atypical Enteropathogenic Escherichia coli O145 Environmental Strains.
| S-EPMC5946043 | biostudies-literature
Unknown Draft Genome Sequences of Five Novel Polyketide Synthetase-Containing Mouse Escherichia coli Strains.
| S-EPMC5054322 | biostudies-literature
Unknown First report of plasmid-mediated quinolone resistance determinant qnrS1 in an Escherichia coli strain of animal origin in Italy.
| S-EPMC2704678 | biostudies-literature
Unknown Complete Genome Sequences of Nitrofurantoin-Sensitive and -Resistant Escherichia coli ST540 and ST2747 Strains.
| S-EPMC3983296 | biostudies-literature