Visual4DTracker: a tool to interact with 3D + t image stacks.

ABSTRACT:

Background

Biological phenomena usually evolves over time and recent advances in high-throughput microscopy have made possible to collect multiple 3D images over time, generating [Formula: see text] (or 4D) datasets. To extract useful information there is the need to extract spatial and temporal data on the particles that are in the images, but particle tracking and feature extraction need some kind of assistance.

Results

This manuscript introduces our new freely downloadable toolbox, the Visual4DTracker. It is a MATLAB package implementing several useful functionalities to navigate, analyse and proof-read the track of each particle detected in any [Formula: see text] stack. Furthermore, it allows users to proof-read and to evaluate the traces with respect to a given gold st

SUBMITTER: Cordelli E 

PROVIDER: S-EPMC7869512 | biostudies-literature | 2021 Feb

REPOSITORIES: biostudies-literature