ComHub: Community predictions of hubs in gene regulatory networks.

ABSTRACT:

Background

Hub transcription factors, regulating many target genes in gene regulatory networks (GRNs), play important roles as disease regulators and potential drug targets. However, while numerous methods have been developed to predict individual regulator-gene interactions from gene expression data, few methods focus on inferring these hubs.

Results

We have developed ComHub, a tool to predict hubs in GRNs. ComHub makes a community prediction of hubs by averaging over predictions by a compendium of network inference methods. Benchmarking ComHub against the DREAM5 challenge data and two independent gene expression datasets showed a robust performance of ComHub over all datasets.

Conclusions

In contrast to other evaluated methods, ComHub consistently scored among the t

SUBMITTER: Akesson J 

PROVIDER: S-EPMC7871572 | biostudies-literature | 2021 Feb

REPOSITORIES: biostudies-literature