Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The complete mitochondrial genome of Laevistrombus canarium (Gastropoda: Stromboidae).

ABSTRACT: Laevistrombus canarium is a marine gastropod species with high economical value. The complete mitochondrial genome of L. canarium has been characterized in this study. The circular mitogenome is 15626 bp in length and comprises 13 protein-coding genes (PCGs), 22 transfer RNA genes, and two ribosomal RNA (rRNA) genes. The organization of these genes is consistent with that of other stromboidae species. The overall base composition of mitochondrial genome is 30.87% A, 38.99% T, 15.54% G, and 14.60% C, with 69.86% AT. Phylogenetic analysis further implies that L. canarium is placed within the Stromboidae.

SUBMITTER: Lee HT

PROVIDER: S-EPMC7889242 | biostudies-literature | 2021 Feb

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

The complete mitochondrial genome of Laevistrombus canarium (Gastropoda: Stromboidae).

Lee Hung-Tai HT Liao Cheng-Hsin CH Huang Chang-Wen CW Chang Yung-Cheng YC Hsu Te-Hua TH

Mitochondrial DNA. Part B, Resources 20210212 2

Laevistrombus canarium is a marine gastropod species with high economical value. The complete mitochondrial genome of L. canarium has been characterized in this study. The circular mitogenome is 15626 bp in length and comprises 13 protein-coding genes (PCGs), 22 transfer RNA genes, and two ribosomal RNA (rRNA) genes. The organization of these genes is consistent with that of other stromboidae species. The overall base composition of mitochondrial genome is 30.87% A, 3 ...[more]

PMID: 33628941

Similar Datasets

The complete mitochondrial genome of Pomacea diffusa (Gastropoda: Ampullariidae).

Project description:In this study, we analyzed the complete mitochondrial genome of the spike-topped apple snail, Pomacea diffusa Blume, 1957 (Gastropoda: Ampullariidae). The mitochondrial genome of P. diffusa was 16,373 bp, consisting 13 protein-coding genes, 2 rRNAs, and 22 tRNAs and a non-coding region with a 12 bp repeat unit. There were 29 mitochondrial genes of P. diffusa are distributed on the H-strand, and the other eight tRNA genes encoded on the L-strand. The average AT content of 13 protein-coding genes was 68.7%. A phylogenetic analysis showed that there was a close relationship between P. diffusa and invasive apple snail species, Pomacea canaliculata and Pomacea aff. maculata.

| S-EPMC7800231 | biostudies-literature

The complete mitochondrial genome of Achatinella mustelina (Gastropoda: Pulmonata: Stylommatophora).

Project description:In this study, we report the complete mitochondrial genome sequence of Achatinella mustelina, an endangered Hawaiian tree snail. The mitogenome is 16 323 bp in length and has a base composition of A (34.7%), T (42.6%), C (12.7%) and G (10.0%). Similar to other Pulmonates, it contains 13 protein-coding genes, 2 rRNA genes and 22 tRNA genes. To our knowledge, this is the first mitochondrial genome sequenced within the Achatinelloidea superfamily, which contains a high number of endangered species. As such, this mitogenome will be useful in conservation genetics studies.

| S-EPMC7871653 | biostudies-literature

The complete mitochondrial genome of Neptunea arthritica cumingii Crosse, (Gastropoda: Buccinidae).

Project description:The complete mitochondrial (mt) genome of the Neptune whelk, Neptunea arthritica cumingii, was determined using genome walking techniques in this study. The total length of the mt genome sequence of N. arthritica cumingii was 15 256 bp, including 13 protein-coding genes, 21 transfer RNA genes and 2 ribosomal RNA genes. The overall composition of the mitogenome was estimated to be 30.85% for A, 38.59% for T, 15.15% for C and 15.40% for G, indicating that an A + T (69.44%)-rich feature occurs in the N. arthritica cumingii mitogenome. The phylogenetic relationships of 11 mollusc species were constructed based on the complete mtDNA sequences by the neighbour-joining method using MEGA 5.0 software (MEGA Inc., Englewood, NJ).

| S-EPMC7799628 | biostudies-literature

The complete mitochondrial genome of Buccinum bayani (Gastropoda: Buccininae) in Korea.

Project description:This study is the first to report the complete 15,262 base pair mitochondrial genome of Buccinum bayani, consisting of 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNA genes, and a control region (D-loop). The overall base composition of the complete genome is A (29.87%), T (39.11%), G (15.86%), and C (15.16%), with a high AT content of 68.98%. Phylogenetic analysis showed that B. bayani was most closely related to B. undatum. The mitogenome of B. bayani will provide helpful information to further our phylogenetic and evolutionary understanding of the family Buccininae.

| S-EPMC9176358 | biostudies-literature

The complete mitochondrial genome of Achatinella sowerbyana (Gastropoda: Pulmonata: Stylommatophora: Achatinellidae).

Project description:In this study, we report the complete mitochondrial genome sequence of Achatinella sowerbyana, an endangered Hawaiian tree snail. The mitogenome is 15,374 bp in length and has a base composition of A (36.4%), T (42.7%), C (9.1%), and G (11.8%). Similar to other pulmonates, it contains 13 protein-coding genes, 2 ribosomal RNA genes, and 22 transfer RNA genes. The gene order is the same as its sister species, A. mustelina. To our knowledge, this is the second mitochondrial genome sequenced within the superfamily Achatinelloidea, and will aid in the examination of the genus Achatinella, part of a spectacular radiation in the Hawaiian Islands.

| S-EPMC7800958 | biostudies-literature

Complete mitochondrial genome of Rivularia auriculata (Gastropoda, Viviparidae) with phylogenetic consideration.

Project description:Complete mitochondrial genome sequence of Rivularia auriculata has a circular genome of 16,552 bp, which is comprised 13 protein-coding genes, 2 rRNA genes, and 22 tRNA genes. The nucleotide composition of the light strand is 43.16% of A, 26.78% of T, 20.18% of C, and 9.88% of G. All genes are encoded on the heavy strand except seven tRNA genes (Met, Tyr, Cys, Trp, Gln, Gly, and Glu) on the light strand. All the protein-coding genes start with ATC initiation codon except ND4 starts with GTG, and two types of inferred termination codons are TAA and TAG. There are 26 intergenic spacers and 4 gene overlaps. It is indicated that R. auriculata has closer genetic relationship with Viviparus chui (88.64% nucleotide sequence identity between them) than the other snail species.

| S-EPMC7707688 | biostudies-literature

Complete mitochondrial genome of the radicine pond snail Radix plicatula (Gastropoda: Lymnaeidae).

Project description:Radix plicatula is broadly distributed in China, as well as Russia. It is one of the intermediate hosts of Fasciola species which leads to the spread of fascioliasis. Here, we first described the complete mitochondrial genome of R. plicatula. The mitogenome is 13,751 bp in length, containing 13 protein-coding genes, 22 tRNA genes, and 2 rRNA genes. The contents of each base are 30.7% A, 39.6% T, 15.7% G, and 13.9% C. The sequence is AT rich (70.3%). Mitochondrial phylogenomic analysis showed that R. plicatula is close to R. auricularia.

| S-EPMC7706513 | biostudies-literature

The complete mitochondrial genome and phylogenetic analysis of Batillaria cumingi (Gastropoda: Batillariidae).

Project description:We determined the complete mitochondrial genome of Batillaria cumingi. The B. cumingi mitochondrial genome is 16,100 bp in length, comprising 13 protein-coding genes, 22 transfer RNA genes, and two ribosomal RNA genes. The nucleotide composition for B. cumingi is 17.5% of C, 16.88% of G, 35.3% of T, and 30.31% of A. In 13 protein-coding genes, all genes start with ATG. For the stop codon, the cox2 gene stops with TTC, the cytb, nad1, and nad2 genes stop with TAG, and the other nine genes are with TAA. Of these 37 genes identified, nine protein-coding genes and six transfer RNA genes are encoded on the heavy strand and the other genes on the light strand. The phylogenetic tree was constructed based on 13 protein-coding genes of the B. cumingi and other 19 Gastropoda species, Sepia latimanus as outgroup using the Neighbour-joining method. The tree showed that the B. cumingi is closely related to the Semisulcospira coreana in Cerithioidea. We believe that this result will be helpful for the study of population genetic and phylogenetic analysis of the family Batillariidae.

| S-EPMC7781879 | biostudies-literature

The complete mitochondrial genome of Cerion uva uva (Gastropoda: Panpulmonata: Stylommatophora: Cerionidae).

Project description:We report the complete mitochondrial genome sequence of Cerion uva uva (Linnaeus 1758), the type species of the type genus of the family Cerionidae. The mitogenome is 15,043 bp in length, has a base composition of A (28.3%), T (34.4%), C (17.3%) and G (20.0%), and contains 13 protein-coding genes, 2 ribosomal RNA genes, as well as 22 transfer RNA genes. Gene order is the same as in Cerion incanum (Leidy 1851), but differs from those of all other Panpulmonata. This is the second mitochondrial genome sequenced within the family Cerionidae and will contribute to the assessment of the phylogeography of this family throughout the islands of the tropical western Atlantic.

| S-EPMC7799654 | biostudies-literature

The complete mitochondrial genome of the apple snail Pomacea maculate (Gastropoda: Ampullariidae).

Project description:We present the complete mitochondrial genome of Pomacea maculate in this study. The mitochondrial genome is 15,512 bp in length, containing 13 protein-coding genes, 2 rRNA genes, 22 tRNA genes. Overall nucleotide compositions of the light strand are 41.13% of A, 30.81% of T, 15.25% of C and 12.81% of G. Its gene arrangement and distribution are different from the typical vertebrates. The absence of D-loop is consistent with the Gastropoda, but at least one lengthy non-coding region is essential regulatory element for the initiation of transcription and replication. Phylogenetic tree is constructed by the maximum-likelihood method based on the complete mitochondrial genomes of 15 species of Caenogastropoda, using Helix aspersa as outgroup to assess their actual phylogenetic relationship and evolution. The result provides fundamental data for resolving phylogenetic and genetic problems related to effective management strategies.

| S-EPMC7800453 | biostudies-literature