A gene expression atlas for kiwifruit (Actinidia chinensis) and network analysis of transcription factors.

ABSTRACT:

Background

Transcriptomic studies combined with a well annotated genome have laid the foundations for new understanding of molecular processes. Tools which visualise gene expression patterns have further added to these resources. The manual annotation of the Actinidia chinensis (kiwifruit) genome has resulted in a high quality set of 33,044 genes. Here we investigate gene expression patterns in diverse tissues, visualised in an Electronic Fluorescent Pictograph (eFP) browser, to study the relationship of transcription factor (TF) expression using network analysis.

Results

Sixty-one samples covering diverse tissues at different developmental time points were selected for RNA-seq analysis and an eFP browser was generated to visualise this dataset. 2839 TFs representing 57 diff

SUBMITTER: Brian L 

PROVIDER: S-EPMC7913447 | biostudies-literature | 2021 Feb

REPOSITORIES: biostudies-literature