Dataset Information

Deep artificial neural network based on environmental sound data for the generation of a children activity classification model.

ABSTRACT: Children activity recognition (CAR) is a subject for which numerous works have been developed in recent years, most of them focused on monitoring and safety. Commonly, these works use as data source different types of sensors that can interfere with the natural behavior of children, since these sensors are embedded in their clothes. This article proposes the use of environmental sound data for the creation of a children activity classification model, through the development of a deep artificial neural network (ANN). Initially, the ANN architecture is proposed, specifying its parameters and defining the necessary values for the creation of the classification model. The ANN is trained and tested in two ways: using a 70-30 approach (70% of the data for training and 30% for testing) and with a k-fold cross-validation approach. According to the results obtained in the two validation processes (70-30 splitting and k-fold cross validation), the ANN with the proposed architecture achieves an accuracy of 94.51% and 94.19%, respectively, which allows to conclude that the developed model using the ANN and its proposed architecture achieves significant accuracy in the children activity classification by analyzing environmental sound.

SUBMITTER: Garcia-Dominguez A

PROVIDER: S-EPMC7924663 | biostudies-literature | 2020

REPOSITORIES: biostudies-literature

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Deep artificial neural network based on environmental sound data for the generation of a children activity classification model.

García-Domínguez Antonio A Galvan-Tejada Carlos E CE Zanella-Calzada Laura A LA Gamboa Hamurabi H Galván-Tejada Jorge I JI Celaya Padilla José María JM Luna-García Huizilopoztli H Arceo-Olague Jose G JG Magallanes-Quintanar Rafael R

PeerJ. Computer science 20201109

Children activity recognition (CAR) is a subject for which numerous works have been developed in recent years, most of them focused on monitoring and safety. Commonly, these works use as data source different types of sensors that can interfere with the natural behavior of children, since these sensors are embedded in their clothes. This article proposes the use of environmental sound data for the creation of a children activity classification model, through the development of a deep artificial ...[more]

PMID: 33816959

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Project description:BackgroundDeep learning has made tremendous successes in numerous artificial intelligence applications and is unsurprisingly penetrating into various biomedical domains. High-throughput omics data in the form of molecular profile matrices, such as transcriptomes and metabolomes, have long existed as a valuable resource for facilitating diagnosis of patient statuses/stages. It is timely imperative to compare deep learning neural networks against classical machine learning methods in the setting of matrix-formed omics data in terms of classification accuracy and robustness.ResultsUsing 37 high throughput omics datasets, covering transcriptomes and metabolomes, we evaluated the classification power of deep learning compared to traditional machine learning methods. Representative deep learning methods, Multi-Layer Perceptrons (MLP) and Convolutional Neural Networks (CNN), were deployed and explored in seeking optimal architectures for the best classification performance. Together with five classical supervised classification methods (Linear Discriminant Analysis, Multinomial Logistic Regression, Naïve Bayes, Random Forest, Support Vector Machine), MLP and CNN were comparatively tested on the 37 datasets to predict disease stages or to discriminate diseased samples from normal samples. MLPs achieved the highest overall accuracy among all methods tested. More thorough analyses revealed that single hidden layer MLPs with ample hidden units outperformed deeper MLPs. Furthermore, MLP was one of the most robust methods against imbalanced class composition and inaccurate class labels.ConclusionOur results concluded that shallow MLPs (of one or two hidden layers) with ample hidden neurons are sufficient to achieve superior and robust classification performance in exploiting numerical matrix-formed omics data for diagnosis purpose. Specific observations regarding optimal network width, class imbalance tolerance, and inaccurate labeling tolerance will inform future improvement of neural network applications on functional genomics data.

Project description:BackgroundTranscriptome sequencing has been broadly available in clinical studies. However, it remains a challenge to utilize these data effectively for clinical applications due to the high dimension of the data and the highly correlated expression between individual genes.MethodsWe proposed a method to transform RNA sequencing data into artificial image objects (AIOs) and applied convolutional neural network (CNN) algorithms to classify these AIOs. With the AIO technique, we considered each gene as a pixel in an image and its expression level as pixel intensity. Using the GSE96058 (n = 2976), GSE81538 (n = 405), and GSE163882 (n = 222) datasets, we created AIOs for the subjects and designed CNN models to classify biomarker Ki67 and Nottingham histologic grade (NHG).ResultsWith fivefold cross-validation, we accomplished a classification accuracy and AUC of 0.821 ± 0.023 and 0.891 ± 0.021 for Ki67 status. For NHG, the weighted average of categorical accuracy was 0.820 ± 0.012, and the weighted average of AUC was 0.931 ± 0.006. With GSE96058 as training data and GSE81538 as testing data, the accuracy and AUC for Ki67 were 0.826 ± 0.037 and 0.883 ± 0.016, and that for NHG were 0.764 ± 0.052 and 0.882 ± 0.012, respectively. These results were 10% better than the results reported in the original studies. For Ki67, the calls generated from our models had a better power for prediction of survival as compared to the calls from trained pathologists in survival analyses.ConclusionsWe demonstrated that RNA sequencing data could be transformed into AIOs and be used to classify Ki67 status and NHG with CNN algorithms. The AIO method could handle high-dimensional data with highly correlated variables, and there was no need for variable selection. With the AIO technique, a data-driven, consistent, and automation-ready model could be developed to classify biomarkers with RNA sequencing data and provide more efficient care for cancer patients.

Dataset Information

Deep artificial neural network based on environmental sound data for the generation of a children activity classification model.

Publications

Deep artificial neural network based on environmental sound data for the generation of a children activity classification model.

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