ReDU: a framework to find and reanalyze public mass spectrometry data.

ABSTRACT: We present ReDU ( https://redu.ucsd.edu/ ), a system for metadata capture of public mass spectrometry-based metabolomics data, with validated controlled vocabularies. Systematic capture of knowledge enables the reanalysis of public data and/or co-analysis of one's own data. ReDU enables multiple types of analyses, including finding chemicals and associated metadata, comparing the shared and different chemicals between groups of samples, and metadata-filtered, repository-scale molecular networking.

SUBMITTER: Jarmusch AK 

PROVIDER: S-EPMC7968862 | biostudies-literature | 2020 Sep

REPOSITORIES: biostudies-literature