Fiji plugins for qualitative image annotations: routine analysis and application to image classification.

ABSTRACT: Quantitative measurements and qualitative description of scientific images are both important to describe the complexity of digital image data. While various software solutions for quantitative measurements in images exist, there is a lack of simple tools for the qualitative description of images in common user-oriented image analysis software. To address this issue, we developed a set of Fiji plugins that facilitate the systematic manual annotation of images or image-regions. From a list of user-defined keywords, these plugins generate an easy-to-use graphical interface with buttons or checkboxes for the assignment of single or multiple pre-defined categories to full images or individual regions of interest. In addition to qualitative annotations, any quantitative measurement from the sta

SUBMITTER: Thomas LSV 

PROVIDER: S-EPMC8014705 | biostudies-literature | 2020

REPOSITORIES: biostudies-literature