Dataset Information

Prediction of the spread of Corona-virus carrying droplets in a bus - A computational based artificial intelligence approach.

ABSTRACT: Public transport has been identified as high risk as the corona-virus carrying droplets generated by the infected passengers could be distributed to other passengers. Therefore, predicting the patterns of droplet spreading in public transport environment is of primary importance. This paper puts forward a novel computational and artificial intelligence (AI) framework for fast prediction of the spread of droplets produced by a sneezing passenger in a bus. The formation of droplets of salvia is numerically modelled using a volume of fluid methodology applied to the mouth and lips of an infected person during the sneezing process. This is followed by a large eddy simulation of the resultant two phase flow in the vicinity of the person while the effects of droplet evaporation and ventilation in the bus are considered. The results are subsequently fed to an AI tool that employs deep learning to predict the distribution of droplets in the entire volume of the bus. This combined framework is two orders of magnitude faster than the pure computational approach. It is shown that the droplets with diameters less than 250 micrometers are most responsible for the transmission of the virus, as they can travel the entire length of the bus.

SUBMITTER: Mesgarpour M

PROVIDER: S-EPMC8055577 | biostudies-literature | 2021 Jul

REPOSITORIES: biostudies-literature

ACCESS DATA

Publications

Prediction of the spread of Corona-virus carrying droplets in a bus - A computational based artificial intelligence approach.

Mesgarpour Mehrdad M Abad Javad Mohebbi Najm JMN Alizadeh Rasool R Wongwises Somchai S Doranehgard Mohammad Hossein MH Ghaderi Saeidreza S Karimi Nader N

Journal of hazardous materials 20210209

Public transport has been identified as high risk as the corona-virus carrying droplets generated by the infected passengers could be distributed to other passengers. Therefore, predicting the patterns of droplet spreading in public transport environment is of primary importance. This paper puts forward a novel computational and artificial intelligence (AI) framework for fast prediction of the spread of droplets produced by a sneezing passenger in a bus. The formation of droplets of salvia is nu ...[more]

PMID: 33611042

Similar Datasets

Project description:Purpose:Next-generation sequencing technologies are actively applied in clinical oncology. Bioinformatics pipeline analysis is an integral part of this process; however, humans cannot yet realize the full potential of the highly complex pipeline output. As a result, the decision to include a variant in the final report during routine clinical sign-out remains challenging. Methods:We used an artificial intelligence approach to capture the collective clinical sign-out experience of six board-certified molecular pathologists to build and validate a decision support tool for variant reporting. We extracted all reviewed and reported variants from our clinical database and tested several machine learning models. We used 10-fold cross-validation for our variant call prediction model, which derives a contiguous prediction score from 0 to 1 (no to yes) for clinical reporting. Results:For each of the 19,594 initial training variants, our pipeline generates approximately 500 features, which results in a matrix of > 9 million data points. From a comparison of naive Bayes, decision trees, random forests, and logistic regression models, we selected models that allow human interpretability of the prediction score. The logistic regression model demonstrated 1% false negativity and 2% false positivity. The final models' Youden indices were 0.87 and 0.77 for screening and confirmatory cutoffs, respectively. Retraining on a new assay and performance assessment in 16,123 independent variants validated our approach (Youden index, 0.93). We also derived individual pathologist-centric models (virtual consensus conference function), and a visual drill-down functionality allows assessment of how underlying features contributed to a particular score or decision branch for clinical implementation. Conclusion:Our decision support tool for variant reporting is a practically relevant artificial intelligence approach to harness the next-generation sequencing bioinformatics pipeline output when the complexity of data interpretation exceeds human capabilities.

Project description:Aptamers are short single-stranded DNA, RNA, or synthetic Xeno nucleic acids (XNA) molecules that can interact with corresponding targets with high affinity. Owing to their unique features, including low cost of production, easy chemical modification, high thermal stability, reproducibility, as well as low levels of immunogenicity and toxicity, aptamers can be used as an alternative to antibodies in diagnostics and therapeutics. Systematic evolution of ligands by exponential enrichment (SELEX), an experimental approach for aptamer screening, allows the selection and identification of in vitro aptamers with high affinity and specificity. However, the SELEX process is time consuming and characterization of the representative aptamer candidates from SELEX is rather laborious. Artificial intelligence (AI) could help to rapidly identify the potential aptamer candidates from a vast number of sequences. This review discusses the advancements of AI pipelines/methods, including structure-based and machine/deep learning-based methods, for predicting the binding ability of aptamers to targets. Structure-based methods are the most used in computer-aided drug design. For this part, we review the secondary and tertiary structure prediction methods for aptamers, molecular docking, as well as molecular dynamic simulation methods for aptamer-target binding. We also performed analysis to compare the accuracy of different secondary and tertiary structure prediction methods for aptamers. On the other hand, advanced machine-/deep-learning models have witnessed successes in predicting the binding abilities between targets and ligands in drug discovery and thus potentially offer a robust and accurate approach to predict the binding between aptamers and targets. The research utilizing machine-/deep-learning techniques for prediction of aptamer-target binding is limited currently. Therefore, perspectives for models, algorithms, and implementation strategies of machine/deep learning-based methods are discussed. This review could facilitate the development and application of high-throughput and less laborious in silico methods in aptamer selection and characterization.

Project description:BackgroundTo accurately identify spread through air spaces (STAS) in clinical stage IA lung adenocarcinoma, our study developed a non-invasive and interpretable biomarker combining clinical and radiomics features using preoperative CT.MethodsThe study included a cohort of 1,325 lung adenocarcinoma patients from three centers, which was divided into four groups: a training cohort (n = 930), a testing cohort (n = 238), an external validation 1 cohort (n = 93), and 2 cohort (n = 64). We collected clinical characteristics and semantic features, and extracted radiomics features. We utilized the LightGBM algorithm to construct prediction models using the selected features. Quantifying the contribution of radiomics features of CT to prediction model using Shapley additive explanations (SHAP) method. The models' performance was evaluated using metrics such as the area under the receiver operating characteristic curve (AUC), negative predictive value (NPV), positive predictive value (PPV), sensitivity, specificity, calibration curve, and decision curve analysis (DCA).ResultsIn the training cohort, the clinical model achieved an AUC value of 0.775, the radiomics model achieved an AUC value of 0.836, and the combined model achieved an AUC value of 0.837. In the testing cohort, the AUC values of the models were 0.743, 0.755, and 0.768. In the external validation 1 cohort, the AUC values of the models were 0.717, 0.758, and 0.765, while in the external validation 2 cohort, 0.725, 0.726 and 0.746. The DeLong test results indicated that the combined model outperformed the clinical model (p < 0.05). DCA indicated that the models provided a net benefit in predicting STAS. The SHAP algorithm explains the contribution of each feature in the model, visually demonstrating the impact of each feature on the model's decisions.ConclusionThe combined model has the potential to serve as a biomarker for predicting STAS using preoperative CT scans, determining the appropriate surgical strategy, and guiding the extent of resection.

Dataset Information

Prediction of the spread of Corona-virus carrying droplets in a bus - A computational based artificial intelligence approach.

Publications

Prediction of the spread of Corona-virus carrying droplets in a bus - A computational based artificial intelligence approach.

Similar Datasets

OmicsDI is part of the ELIXIR infrastructure

Tweets