Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Sequencing and analysis of the mitochondrial genome of Pennahia anea (Bloch, 1793) (Perciformes: Sciaenidae).

ABSTRACT: Donkey croaker, Pennahia anea (Bloch, 1793) is a commercially important croaker in the Indo-Pacific region. In this study, we sequenced and analyzed the mitogenome of P. anea. The nearly complete mitochondrial genome of P. anea is 15,694 bp in size. It contained 13 protein-coding genes (PCGs), 2 rRNA genes, and 22 tRNA genes. The sequence had the A-T content of 55.4% and GC content of 44.6%. All 13 PCGs used ATG codon for initiation, while TAA codon was the most common for termination. Phylogenetic analysis demonstrated that P. anea is located within the genus Pennahia. This study provides additional data for the understanding of the phylogeny of the family Sciaenidae.

SUBMITTER: Dinh Do T

PROVIDER: S-EPMC8057074 | biostudies-literature | 2021 Apr

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Sequencing and analysis of the mitochondrial genome of Pennahia anea (Bloch, 1793) (Perciformes: Sciaenidae).

Dinh Do Thinh T Van Chien Pham CP Dao Minh Dong MD Quyet Thanh Vu TV Nguyen Van Quan VQ Kim Chang-Bae CB

Mitochondrial DNA. Part B, Resources 20210415 4

Donkey croaker, Pennahia anea (Bloch, 1793) is a commercially important croaker in the Indo-Pacific region. In this study, we sequenced and analyzed the mitogenome of P. anea. The nearly complete mitochondrial genome of P. anea is 15,694 bp in size. It contained 13 protein-coding genes (PCGs), 2 rRNA genes, and 22 tRNA genes. The sequence had the A-T content of 55.4% and GC content of 44.6%. All 13 PCGs used ATG codon for initiation, while TAA codon was the most common for t ...[more]

PMID: 33948490

Similar Datasets

Complete mitochondrial genome for the whitemouth croaker Micropogonias furnieri (Perciformes: Sciaenidae).

Project description:This study is the first to research to report the complete 16,496 bp mitochondrial genome of Micropogonias furnieri, which consists of 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNA genes, and a control region (D-loop). The overall base composition of the complete genome is 27.26% A, 25.65% T, 16.46% G, and 30.63% C, with a high A + T content of 52.91%. Phylogenetic analysis showed that M. furnieri was most closely related to Sciaenops ocellatus. In this study, the mitogenome of M. furnieri will provide useful information for phylogenetic and evolutionary understanding in the family Sciaenidae.

| S-EPMC8635664 | biostudies-literature

The complete mitochondrial genome of bobo croaker Pseudotolithus elongatus (Perciformes: Sciaenidae).

Project description:The complete mitochondrial genome of Pseudotolithus elongatus (Perciformes: Sciaenidae) is determined based on NGS technology. The assembled mitogenome is a 16,497 bp in length containing a typical set of the 13 protein-coding genes, 22 tRNAs, 2 rRNA genes, and the 1 putative control region. The overall base composition is A (27.8%), T (25.3%), G (16.1%), and C (30.8%) with an A-T content of 53.1%. The phylogenetic analysis of 36 mitogenomes from the GenBank indicated that P. elongatus is closely related to the Aplodinotus grunniens. This mitogenome information of the P. elongatus would be useful to understand evolutionary and phylogenetic analysis of the family Sciaenidae fishes.

| S-EPMC7707222 | biostudies-literature

The complete mitochondrial genome of Menticirrhus littoralis (Sciaenidae, Perciformes) and its phylogeny.

Project description:We describe the mitochondrial genome of the Menticirrhus littoralis and infer the phylogenetic position of Menticirrhus in the family Sciaenidae. The genome contains 16,499 base pairs distributed in gene regions (13 protein-coding regions, 2 rRNAs and 22 tRNAs) and a control region (CR). Our phylogenetic analysis suggests, with strong statistical support, that Menticirrhus is a sister group of the other sciaenids.

| S-EPMC7510665 | biostudies-literature

Complete mitochondrial DNA genome of grey pomfret Pampus cinereus (Bloch, 1795) (Perciformes: Stromateidae).

Project description:In this study, we sequenced the complete mitochondrial genome of Pampus cinereus (Bloch, 1795). This mitochondrial genome, consisting of 16,540 base pairs (bp), contains 13 protein-coding genes, two ribosomal RNAs, 22 transfer RNAs, and two mainly noncoding regions (control region and origin of light-strand replication) as those found in other vertebrates. Control region with 846 bp in length, is located between tRNAPro and tRNAPhe. The overall base composition of the heavy strand shows 27.4% of T, 27.5% of C, 30.0% of A, and 15.2% of G, with a slight A + T rich bias (57.4%). The complete mitochondrial genome data will provide useful genetic markers for the studies on the molecular identification, population genetics, phylogenetic analysis and conservation genetics.

| S-EPMC7800252 | biostudies-literature

Complete mitochondrial genome and the phylogenetic position of the tigertooth croaker Otolithes ruber (Perciformes: Sciaenidae).

Project description:In this study, the complete mitogenome of the tigertooth croaker Otolithes ruber was first determined. This mitogenome is 16,589 bp in length, and consists of 37 genes with the typical gene order and direction of transcription in vertebrates. The overall nucleotide composition is: 27.4% A; 29.1% C; 16.1% G and 27.4% T. Sizes of the 22 tRNA genes range from 66 to 74 bp. Four start codons (ACG, CTG, GTG and ATG) and three stop (AGA, TAG and TAA/TA/T) codons were detected in 13 protein-coding genes. In the Bayesian treebased on the complete mitogenomes of 18 species (including O. ruber) from the family Sciaenidae, all nodes were strongly supported. The phylogenetic results suggested that O. ruber was closed to the black-spotted croaker Protonibea diacanthus.

| S-EPMC7800729 | biostudies-literature

Complete mitochondrial genome and the phylogenetic position of the Caroun croaker Johnius carouna (perciformes: Sciaenidae).

Project description:In this study, the complete mitogenome of the Caroun croaker Johnius carouna was obtained. Its mitogenome is 18,752 bp in length, consisting of 37 genes with the typical gene order and direction of transcription in vertebrates. Gene rearrangement was found in J. carouna, same as another two Johnius species available in GenBank, J. distinctus (MF083699) and J. grypotus (KC491206). The overall nucleotide composition is: 24.2% A; 18.0% C; 21.4% G, and 36.4% T. Sizes of the 23 tRNA genes range from 67 to 75 bp. One start codons (ATG) and three stop codons (TAG, AGG, and TAA/TA/T) were detected in 13 protein-coding genes. In the Bayesian tree based on the complete mitogenomes of 21 species (including J. carouna) from the family Sciaenidae, all nodes were strongly supported. The result shows that J. carouna was placed as sister to the silver croaker J. grypotus of the same genus. The mechanism of gene rearrangement in the genus Johnius merits further investigation.

| S-EPMC7800398 | biostudies-literature

Complete mitochondrial genome sequence for the cuneate drum Nibea miichthioides (Perciformes, Sciaenidae) and its phylogeny.

Project description:The cuneate drum, Nibea miichthioides, is a native sciaenid species with relevant commercial importance in China. However, the wild resource represented by this species has been severely damaged owing to overfishing and water pollution. For conserving and recovering the species through appropriate measures, genetic studies on the population are necessary. The complete mitochondrial genome of N. miichthioides is a supplement to the mitogenome database for giant croakers and can be used to address taxonomic problems and phylogenetic relationships in Sciaenidae. In this study, we sequenced and characterized the complete mitochondrial genome of N. miichthioides. The full length of the complete mitochondrial DNA was 16,490 bp. It contained 13 protein-coding genes, 22 tRNA genes, two rRNA genes and a control region. All 21 tRNA genes can fold into a typical cloverleaf structure except for tRNASer (AGY), which lacks a dihydrouridine arm. The phylogenetic analysis using the complete mitochondrial genome revealed that N. miichthioides, A. amoyensis, N. japonica and A. japonicus might be grouped in Argyrosomus, but not belonged to Nibea of Argyrosominae, which was highly consistent with the proposal of Talwar. This investigation provides an effective molecular tool for genetic research on and protection of this endangered species.

| S-EPMC7800342 | biostudies-literature

Complete mitochondrial genome and the phylogenetic position of the Pawak croaker Pennahia pawak (Perciformes: Sciaenidae).

Project description:In this study, the complete mitogenome of the Pawak croaker Pennahia pawak was first determined. This mitogenome is 16,408 bp in length, and consists of 37 genes with the typical gene order and direction of transcription in vertebrates. The overall nucleotide composition is: 27.7% A, 29.5% C, 15.9% G, and 26.9% T. Sizes of the 22 tRNA genes range from 66 to 75 bp. One start codons (ATG) and two stop codons (AGA and TAA/TA/T) were detected in 13 protein-coding genes. In the Bayesian tree based on the complete mitogenomes of 17 species (including P. pawak) from the family Sciaenidae, all nodes were strongly supported. The phylogenetic results suggested that P. pawak has the closest relationship to the silver croaker P. argentata, a species from the same genus.

| S-EPMC7800484 | biostudies-literature

Complete mitochondrial genome and the phylogenetic position of the blackmouth croaker Atrobucca nibe (Perciformes: Sciaenidae).

Project description:In this study, the complete mitogenome of the blackmouth croaker Atrobucca nibe was obtained. Its mitogenome is 16,842 bp in length, consisting of 37 genes with the typical gene order and direction of transcription in vertebrates. The overall nucleotide composition is: 27.2% A; 31.2% C; 16.4% G and 25.2% T. Sizes of the 22 tRNA genes range from 66 to 74 bp. One start codons (ATG) and three stop codons (TAG, AGA, and TAA/TA/T) were detected in 13 protein-coding genes. In the Bayesian tree based on the complete mitogenomes of 20 species (including A. nibe) from the family Sciaenidae, all nodes were strongly supported. The result suggested that A. nibe was subsequent to the group with genera Otolithes, Chrysochir, Megalonibea, Pennahia, Nibea, Dendrophysa, and Johnius.

| S-EPMC7800086 | biostudies-literature

Complete mitochondrial genome and the phylogenetic position of the bighead pennah croaker Pennahia macrocephalus (Perciformes: Sciaenidae).

Project description:The complete mitogenome of the bighead pennah croaker Pennahia microcephalus was first determined in this study. It is 16,508 bp in length with the typical gene order and transcriptional direction in vertebrates containing 37 genes. The overall nucleotide composition is 27.5% A; 31.2% C; 16.0% G, and 25.3% T. The sizes of the 22 tRNA genes range from 68 to 75 bp. Two start (ATC and ATG) and three stop (AGA, TAG, and TAA/TA/T) codons were found in the protein-coding genes. In the Bayesian tree, all nodes were strongly supported based on the complete mitogenomes of 16 species from the family Sciaenidae. The phylogenetic results suggested P. macrocephalus has the closest relationship to the silver croaker P. argentata, a species from the same genus.

| S-EPMC7800546 | biostudies-literature