Unknown

Dataset Information

0

Immune evolution from preneoplasia to invasive lung adenocarcinomas and underlying molecular features.


ABSTRACT: The mechanism by which anti-cancer immunity shapes early carcinogenesis of lung adenocarcinoma (ADC) is unknown. In this study, we characterize the immune contexture of invasive lung ADC and its precursors by transcriptomic immune profiling, T cell receptor (TCR) sequencing and multiplex immunofluorescence (mIF). Our results demonstrate that anti-tumor immunity evolved as a continuum from lung preneoplasia, to preinvasive ADC, minimally-invasive ADC and frankly invasive lung ADC with a gradually less effective and more intensively regulated immune response including down-regulation of immune-activation pathways, up-regulation of immunosuppressive pathways, lower infiltration of cytotoxic T cells (CTLs) and anti-tumor helper T cells (Th), higher infiltration of regulatory T cells (Tregs), decreased T cell clonality, and lower frequencies of top T cell clones in later-stages. Driver mutations, chromosomal copy number aberrations (CNAs) and aberrant DNA methylation may collectively impinge host immune responses and facilitate immune evasion, promoting the outgrowth of fit subclones in preneoplasia into dominant clones in invasive ADC.

SUBMITTER: Dejima H 

PROVIDER: S-EPMC8113327 | biostudies-literature | 2021 May

REPOSITORIES: biostudies-literature

altmetric image

Publications

Immune evolution from preneoplasia to invasive lung adenocarcinomas and underlying molecular features.

Dejima Hitoshi H   Hu Xin X   Chen Runzhe R   Zhang Jiexin J   Fujimoto Junya J   Parra Edwin R ER   Haymaker Cara C   Hubert Shawna M SM   Duose Dzifa D   Solis Luisa M LM   Su Dan D   Fukuoka Junya J   Tabata Kazuhiro K   Pham Hoa H N HHN   Mcgranahan Nicholas N   Zhang Baili B   Ye Jie J   Ying Lisha L   Little Latasha L   Gumbs Curtis C   Chow Chi-Wan CW   Estecio Marcos Roberto MR   Godoy Myrna C B MCB   Antonoff Mara B MB   Sepesi Boris B   Pass Harvey I HI   Behrens Carmen C   Zhang Jianhua J   Vaporciyan Ara A AA   Heymach John V JV   Scheet Paul P   Lee J Jack JJ   Wu Jia J   Futreal P Andrew PA   Reuben Alexandre A   Kadara Humam H   Wistuba Ignacio I II   Zhang Jianjun J  

Nature communications 20210511 1


The mechanism by which anti-cancer immunity shapes early carcinogenesis of lung adenocarcinoma (ADC) is unknown. In this study, we characterize the immune contexture of invasive lung ADC and its precursors by transcriptomic immune profiling, T cell receptor (TCR) sequencing and multiplex immunofluorescence (mIF). Our results demonstrate that anti-tumor immunity evolved as a continuum from lung preneoplasia, to preinvasive ADC, minimally-invasive ADC and frankly invasive lung ADC with a gradually  ...[more]

Similar Datasets

2021-03-17 | GSE169033 | GEO
| PRJNA714945 | ENA
| S-EPMC10841057 | biostudies-literature
2024-11-26 | GSE282617 | GEO
| PRJNA1189476 | ENA
| S-EPMC7846738 | biostudies-literature
| S-EPMC8580984 | biostudies-literature
| S-EPMC9722784 | biostudies-literature
| S-EPMC6611767 | biostudies-literature
| S-EPMC8631942 | biostudies-literature