Profiling Thermus thermophilus Argonaute Guide DNA Sequence Preferences by Functional Screening.

ABSTRACT: Prokaryotic Argonautes (pAgo) are an increasingly well-studied class of guided endonucleases, and the underlying mechanisms by which pAgo generate nucleic acid guides in vivo remains an important topic of investigation. Recent insights into these mechanisms for the Argonaute protein from Thermus thermophilus has drawn attention to global sequence and structural feature preferences involved in oligonucleotide guide selection. In this work, we approach the study of guide sequence preferences in T. thermophilus Argonaute from a functional perspective. Screening a library of 1,968 guides against randomized single- and double-stranded DNA substrates, endonuclease activity associated with each guide was quantified using high-throughput capillary electrophoresis, and localize

SUBMITTER: Hunt EA 

PROVIDER: S-EPMC8118625 | biostudies-literature | 2021

REPOSITORIES: biostudies-literature