Challenges for FAIR-compliant description and comparison of crop phenotype data with standardized controlled vocabularies.

ABSTRACT: Crop phenotypic data underpin many pre-breeding efforts to characterize variation within germplasm collections. Although there has been an increase in the global capacity for accumulating and comparing such data, a lack of consistency in the systematic description of metadata often limits integration and sharing. We therefore aimed to understand some of the challenges facing findable, accesible, interoperable and reusable (FAIR) curation and annotation of phenotypic data from minor and underutilized crops. We used bambara groundnut (Vigna subterranea) as an exemplar underutilized crop to assess the ability of the Crop Ontology system to facilitate curation of trait datasets, so that they are accessible for comparative analysis. This involved generating a controlled vocabulary Trait Diction

SUBMITTER: Andres-Hernandez L 

PROVIDER: S-EPMC8122365 | biostudies-literature | 2021 May

REPOSITORIES: biostudies-literature