Integration of 1:1 orthology maps and updated datasets into Echinobase.

ABSTRACT: Echinobase (https://echinobase.org) is a central online platform that generates, manages and hosts genomic data relevant to echinoderm research. While the resource primarily serves the echinoderm research community, the recent release of an excellent quality genome for the frequently studied purple sea urchin (Strongylocentrotus purpuratus genome, v5.0) has provided an opportunity to adapt to the needs of a broader research community across other model systems. To this end, establishing pipelines to identify orthologous genes between echinoderms and other species has become a priority in many contexts including nomenclature, linking to data in other model organisms, and in internal functionality where data gathered in one hosted species can be associated with genes in other hosted echinode

SUBMITTER: Foley S 

PROVIDER: S-EPMC8132956 | biostudies-literature | 2021 May

REPOSITORIES: biostudies-literature