Browse
Submit Data
Databases
API
Help

Dataset Information

7 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Transcriptome RNA Sequencing Data Set of Differential Gene Expression in Escherichia coli BW25113 Wild-Type and slyA Mutant Strains.

ABSTRACT: Escherichia coli laboratory strains remain instrumental for the development of tools and techniques in molecular microbiology. The transcriptional regulator SlyA, associated with host-derived oxidative stress, antibiotic resistance, and virulence, is prominent in Enterobacteriaceae Here, we announce a transcriptome data set detailing the global gene expression in E. coli BW25113 and its slyA mutant.

SUBMITTER: Ojo O

PROVIDER: S-EPMC8142576 | biostudies-literature |

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Similar Datasets

Transcriptome RNA Sequencing Data Set of Differential Gene Expression in Escherichia Coli BW25113 SlyA Wild Type and Mutant Strains

Project description:Escherichia coli laboratory strains remain instrumental to the discovery and development of biomarkers as drugs and diagnostic analytes in the post genomic era. The transcriptional regulator SlyA is a member of the multiple antibiotic resistance regulator family of transcription factors, which is associated with bacterial responses to host-derived oxidative stress, antibiotics resistance and virulence, and homologues exist in other Enterobacteriaceae. Here, we announce a transcriptome RNA sequencing data set detailing global gene expression in the wild type E. coli BW25113 and the slyA mutant. Results reveal heterogeneous functionality of SlyA that may vary between pathovars of E. coli. but which require further annotations of differentially expressed tRNAs

2021-03-16 | GSE168963 | GEO

Transcriptome RNA Sequencing Data Set of Differential Gene Expression in Escherichia Coli BW25113 SlyA Wild Type and Mutant Strains

Project description:Transcriptome RNA Sequencing Data Set of Differential Gene Expression in Escherichia Coli BW25113 SlyA Wild Type and Mutant Strains

| PRJNA714667 | ENA

Complete Genome Sequence of Escherichia coli BW25113.

Project description: Not available

| S-EPMC4200154 | biostudies-literature

Metabolomics in Escherichia coli mutant strains

Project description:Escherichia coli mutant strains were prepared for metabolomics analysis.

2019-07-09 | ST001321 | MetabolomicsWorkbench

Differential transcriptome analysis of enterohemorrhagic Escherichia coli strains reveals differences in response to plant-derived compounds.

Project description: Not available

| S-EPMC6729007 | biostudies-literature

Transcriptional profiling of a slyA mutant and a slyA-overexpression strain of Escherichia coli MG1655 in order to elucidate the SlyA regulon

Project description:A microarray study was performed to identify the Escherichia coli SlyA regulon. The wild-type (parental) Escherichia coli MG1655 strain was compared to an isogenic slyA deletion mutant, whilst a slyA-overexpression strain (in pET28a) was compared to an empty (pET28a) vector control. Continuous chemostat cultures were obtained (Evans medium pH 6.9, 0.2 h-1 dilution rate, 1 culture volume per hour air input, 400 rpm). Samples were eluted directly into RNAprotect, RNA purified and then hybridised in a reference-style format to micorarrays.

2017-01-25 | E-MTAB-5220 | biostudies-arrayexpress

Data set for transcriptome analysis of Escherichia coli exposed to nickel.

Project description: Not available

| S-EPMC5026706 | biostudies-literature

Transcriptional responses of Escherichia coli rpoS- BW25113 vs. wild-type BW25113 under 15% ethanol shock in log phase

Project description:RpoS, an alternative sigma factor, is critical for stress response in Escherichia coli.RpoS also acts as a global regulator for stress control of gene expression, and actually dose so in log stage and stationary stage. To further understand the effect of environmental stresses on in ethanologenic strains, DNA microarrys was used to analyze the expression profiles of E. coli and its rpoS mutant strain.

2010-07-20 | GSE17526 | GEO

Transcriptome and proteome analyses of adaptive responses to methyl methanesulfonate in Escherichia coli K-12 and ada mutant strains.

Project description: Not available

| S-EPMC2753364 | biostudies-literature

RNA Sequencing of wild type and RNA polymerase mutant (rpoCA494V) strains of Escherichia coli

Project description:RNA Sequencing of wild type Eschrichia coli and a RNA polymerase mutant isolated from deep stationary phase

2020-04-01 | GSE141883 | GEO