Browse
Submit Data
Databases
API
Help

Dataset Information

39 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Complete Genome Sequence of Buttiauxella agrestis DSM 9389.

ABSTRACT: We report here the complete genome sequence of Buttiauxella agrestis DSM 9389, which harbors eight 16S rRNA genes classified into three types. The genome sequence of this strain showed a high average nucleotide identity (97.3%) with that of the highly membrane vesicle-producing strain B. agrestis ATCC 33320^T.

SUBMITTER: Nakamichi N

PROVIDER: S-EPMC8142578 | biostudies-literature | 2021 May

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Complete Genome Sequence of Buttiauxella agrestis DSM 9389.

Nakamichi Nao N Moriuchi Ryota R Dohra Hideo H Futamata Hiroyuki H Tashiro Yosuke Y

Microbiology resource announcements 20210513 19

We report here the complete genome sequence of Buttiauxella agrestis DSM 9389, which harbors eight 16S rRNA genes classified into three types. The genome sequence of this strain showed a high average nucleotide identity (97.3%) with that of the highly membrane vesicle-producing strain B. agrestis ATCC 33320T. ...[more]

PMID: 33986092

Similar Datasets

Complete Genome Sequence of Coprothermobacter proteolyticus DSM 5265.

Project description:Here we present the complete 1,424,912-bp genome sequence of Coprothermobacter proteolyticus DSM 5265, isolated from a thermophilic digester fermenting tannery wastes and cattle manure.

| S-EPMC4022818 | biostudies-literature

Complete Genome Sequence of Sporomusa termitida DSM 4440T.

Project description:Sporomusa termitida type strain DSM 4440 was isolated from the intestinal content of the termite Nasutitermes nigriceps The genome consists of one circular chromosome (5,185,220 bp) and a megaplasmid (131,121 bp) with an overall G+C content of 49.11%. It harbors 4,764 predicted protein-encoding genes.

| S-EPMC7067948 | biostudies-literature

Complete Genome Sequence of Clostridium clariflavum DSM 19732.

Project description:Clostridium clariflavum is a Cluster III Clostridium within the family Clostridiaceae isolated from thermophilic anaerobic sludge (Shiratori et al, 2009). This species is of interest because of its similarity to the model cellulolytic organism Clostridium thermocellum and for the ability of environmental isolates to break down cellulose and hemicellulose. Here we describe features of the 4,897,678 bp long genome and its annotation, consisting of 4,131 protein-coding and 98 RNA genes, for the type strain DSM 19732.

| S-EPMC3368404 | biostudies-literature

Complete Genome Sequence of Pseudomonas balearica DSM 6083T.

Project description:The whole-genome sequence of ITALIC! Pseudomonas balearicaSP1402 (DSM 6083(T)) has been completed and annotated. It was isolated as a naphthalene degrader from water of a lagooning wastewater treatment plant. ITALIC! P. balearicastrains tolerate up to 8.5% NaCl and are considered true marine denitrifiers.

| S-EPMC4841123 | biostudies-literature

Complete Genome Sequence of Paraclostridium bifermentans DSM 14991.

Project description:The complete genome sequence of Paraclostridium bifermentans was obtained by assembly of Illumina and Oxford Nanopore (ONT) reads. The sequence will enable study into the organism's ability to biohydrogenate unsaturated acyl chains in the transformation of C20 polyunsaturated fatty acids (PUFAs) into the corresponding bioactive non-methylene-interrupted fatty acids (NMIFAs).

| S-EPMC9302108 | biostudies-literature

Buttiauxella agrestis

Project description:Buttiauxella agrestis overview

| PRJNA65537 | ENA

The complete chloroplast genome sequence of Styrax agrestis (Lour.) G. Don (Styracaceae).

Project description:Styrax agrestis (Lour.) G. Don, is a deciduous species of Styracaceae with beautiful shape, drooping flowers, and blooming like snow. Here, we characterized the complete chloroplast (cp) genome of S. agrestis using next generation sequencing. The circular complete cp genome of S. agrestis is 157,893 bp in length, containing a large single-copy (LSC) region of 87,512 bp, and a small single-copy (SSC) region of 18,285 bp. It comprises 136 genes, including eight rRNA genes, 37 tRNAs genes, 90 protein-coding genes, and one pseudo gene. The GC content of S. agrestis cp genome is 36.96%. The phylogenetic analysis suggests that S. agrestis is a sister species to Styrax faberi in Styracaceae.

| S-EPMC7954495 | biostudies-literature

Complete Genome Sequence of Cupriavidus necator H16 (DSM 428).

Project description:The hydrogen-utilizing strain Cupriavidus necator H16 (DSM 428) was sequenced using a combination of PacBio and Illumina sequencing. Annotation of this strain reveals 6,543 protein-coding genes, 263 pseudogenes, 64 tRNA genes, and 15 rRNA genes.

| S-EPMC6742796 | biostudies-literature

Complete genome sequence of Allochromatium vinosum DSM 180(T).

Project description:Allochromatium vinosum formerly Chromatium vinosum is a mesophilic purple sulfur bacterium belonging to the family Chromatiaceae in the bacterial class Gammaproteobacteria. The genus Allochromatium contains currently five species. All members were isolated from freshwater, brackish water or marine habitats and are predominately obligate phototrophs. Here we describe the features of the organism, together with the complete genome sequence and annotation. This is the first completed genome sequence of a member of the Chromatiaceae within the purple sulfur bacteria thriving in globally occurring habitats. The 3,669,074 bp genome with its 3,302 protein-coding and 64 RNA genes was sequenced within the Joint Genome Institute Community Sequencing Program.

| S-EPMC3368242 | biostudies-literature

Complete genome sequence of Propionibacterium freudenreichii DSM 20271(T).

Project description:Propionibacterium freudenreichii subsp. freudenreichii DSM 20271(T) is the type strain of species Propionibacterium freudenreichii that has a long history of safe use in the production dairy products and B12 vitamin. P. freudenreichii is the type species of the genus Propionibacterium which contains Gram-positive, non-motile and non-sporeforming bacteria with a high G + C content. We describe the genome of P. freudenreichii subsp. freudenreichii DSM 20271(T) consisting of a 2,649,166 bp chromosome containing 2320 protein-coding genes and 50 RNA-only encoding genes.

| S-EPMC4619572 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data