Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Draft Genome Sequence of Pandoravirus japonicus Isolated from the Sabaishi River, Niigata, Japan.

ABSTRACT: "Pandoraviridae" is a proposed family of the phylum Nucleocytoviricota Its features include an amphora-shaped capsid and the largest genome among all viruses. We report the isolation and genome sequencing of a new member of this family, named Pandoravirus japonicus, the third strain discovered in Japan.

SUBMITTER: Hosokawa N

PROVIDER: S-EPMC8142585 | biostudies-literature | 2021 May

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Draft Genome Sequence of Pandoravirus japonicus Isolated from the Sabaishi River, Niigata, Japan.

Hosokawa Nao N Takahashi Haruna H Aoki Keita K Takemura Masaharu M

Microbiology resource announcements 20210513 19

"Pandoraviridae" is a proposed family of the phylum Nucleocytoviricota Its features include an amphora-shaped capsid and the largest genome among all viruses. We report the isolation and genome sequencing of a new member of this family, named Pandoravirus japonicus, the third strain discovered in Japan. ...[more]

PMID: 33986099

Similar Datasets

Draft Genome Sequence of Medusavirus Stheno, Isolated from the Tatakai River of Uji, Japan.

Project description:"Medusaviridae" is a proposed family of large double-stranded DNA (dsDNA) viruses so far represented by a sole virus isolated from a hot spring. In the present study, we report the isolation and genome sequencing of a second member of this family, medusavirus stheno, discovered from a freshwater sample with an Acanthamoeba castellanii coculture.

| S-EPMC8407743 | biostudies-literature

Draft Genome Sequence of Tokyovirus, a Member of the Family Marseilleviridae Isolated from the Arakawa River of Tokyo, Japan.

Project description:Members of the Marseilleviridae family are large DNA viruses with icosahedral particles that infect Acanthamoeba cells. This report presents a new Marseilleviridae family member discovered in a water/soil sample from a river in Tokyo, named Tokyovirus, with genome size of 370 to 380 kb.

| S-EPMC4901213 | biostudies-literature

Whole-Genome Sequence of Listeria newyorkensis, Isolated from River Water in Japan.

Project description:Listeria newyorkensis is a bacterium that was recently classified into the genus Listeria So far, there are only two reports of isolation of L. newyorkensis from food. Here, we report the whole-genome sequence of L. newyorkensis strain 2-1, isolated from river water in Japan.

| S-EPMC6696635 | biostudies-literature

Draft Genome Sequence of Naganishia liquefaciens Strain N6, Isolated from the Japan Trench.

Project description:The draft genome sequence of the deep-sea yeast Naganishia liquefaciens strain N6, isolated from the Japan Trench, is reported here. This strain was previously classified into a Cryptococcus clade. Phylogenetic analysis using the presented sequence suggests that strain N6 is in the clade of the genus Naganishia.

| S-EPMC7679087 | biostudies-literature

Complete Genome Sequence of Geobacter sulfurreducens Strain YM18, Isolated from River Sediment in Japan.

Project description:Geobacter sulfurreducens is known to be a dominant species in the anode biofilms of microbial fuel cells. Here, we report the complete genome sequence of G. sulfurreducens strain YM18. Strain YM18 was isolated from a biofilm formed on an anode poised at -400 mV (versus an Ag/AgCl electrode) in a bioelectrochemical system.

| S-EPMC5946036 | biostudies-literature

Draft Genome Sequence of Escherichia coli Strain Tj, Isolated from the Varzob River in Tajikistan.

Project description:The 4.6-Mbp draft genome sequence of Escherichia coli strain Tj, isolated from the Varzob River in Tajikistan, is presented. This strain possesses four prophage elements related to Shigella phage SfV, E. coli O157:H7-specific phage ϕV10, lambdoid phage HK225, and coliphage Ayreon. It contains a gene encoding a hemolysin E toxin.

| S-EPMC7545282 | biostudies-literature

Draft Genome Sequence of Stenotrophomonas maltophilia CRB139-1, Isolated from Poultry Meat in Japan.

Project description:Stenotrophomonas maltophilia is a nosocomial pathogen that primarily causes respiratory infection in humans. This pathogen is widely distributed in the environment, including in foods. Here, we report the draft genome sequence of S. maltophilia strain CRB139-1, isolated from poultry meat in Japan. The genome size was 4,619,918?bp at 90× coverage.

| S-EPMC7082454 | biostudies-literature

Draft Genome Sequence of Streptomyces sp. Strain RKCA744, Isolated from the Arauca River, Colombia.

Project description:Streptomyces sp. strain RKCA744 was isolated from sediment collected from the Arauca River, Colombia.

| S-EPMC9584321 | biostudies-literature

Draft Genome Sequence of Flavobacteriumpsychrophilum Strain SSADA-1411, Isolated from an Ayu (Plecoglossus altivelis altivelis) Migrating Downriver To Spawn in the Shimanto River, Kochi, Japan.

Project description:Here, we report the draft genome sequence and annotation of Flavobacterium psychrophilum strain SSADA-1411. This strain was isolated from the skin ulcer of an ayu (Plecoglossus altivelis altivelis) migrating downriver to spawn in the lower Shimanto River, in western Kochi Prefecture on Shikoku Island in Japan.

| S-EPMC5543645 | biostudies-other

Draft Genome Sequence of Microcystis aeruginosa NIES-4285, Isolated from Brackish Water (Lake Abashiri, Japan).

Project description:Microcystis aeruginosa is a bloom-forming cyanobacterium found in fresh and brackish waters worldwide. We sequenced the whole genome of M. aeruginosa NIES-4285, isolated from Lake Abashiri, Japan. Its genome contains approximately 5.2 Mbp with an average G+C content of 42.60% and is predicted to have 4,980 protein-coding genes.

| S-EPMC6368646 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data