Dataset Information

Detection of Reproducible Major Effect QTL for Petal Traits in Garden Roses.

ABSTRACT: The detection of QTL by association genetics depends on the genetic architecture of the trait under study, the size and structure of the investigated population and the availability of phenotypic and marker data of sufficient quality and quantity. In roses, we previously demonstrated that major QTL could already be detected in small association panels. In this study, we analyzed petal number, petal size and fragrance in a small panel of 95 mostly tetraploid garden rose genotypes. After genotyping the panel with the 68 K Axiom WagRhSNP chip we detected major QTL for all three traits. Each trait was significantly influenced by several genomic regions. Some of the QTL span genomic regions that comprise several candidate genes. Selected markers from some of these regions were converted into KASP markers and were validated in independent populations of up to 282 garden rose genotypes. These markers demonstrate the robustness of the detected effects independent of the set of genotypes analyzed. Furthermore, the markers can serve as tools for marker-assisted breeding in garden roses. Over an extended timeframe, they may be used as a starting point for the isolation of the genes underlying the QTL.

SUBMITTER: Schulz D

PROVIDER: S-EPMC8145204 | biostudies-literature | 2021 Apr

REPOSITORIES: biostudies-literature

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Detection of Reproducible Major Effect QTL for Petal Traits in Garden Roses.

Schulz Dietmar D Linde Marcus M Debener Thomas T

Plants (Basel, Switzerland) 20210429 5

The detection of QTL by association genetics depends on the genetic architecture of the trait under study, the size and structure of the investigated population and the availability of phenotypic and marker data of sufficient quality and quantity. In roses, we previously demonstrated that major QTL could already be detected in small association panels. In this study, we analyzed petal number, petal size and fragrance in a small panel of 95 mostly tetraploid garden rose genotypes. After genotypin ...[more]

PMID: 33946713

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Project description:The limited knowledge about the inheritance of traits in roses makes the efficient development of rose varieties challenging. In order to achieve breeding goals, the inheritance of traits needs to be explored. Additionally, for the inheritance of a trait like scent, which remains a mystery, it is crucial to know the success of parental traits in transmitting them to the next generation. Understanding this allows for accurate parental selection, ensuring sustainability in meeting market demand and providing convenience to breeders. The aim of this study was to assess the success of cross-combinations between scented old garden roses and hybrid tea roses used in cut roses in transferring their existing traits, with the objective of achieving scented cut roses. The evaluated traits included recurrent blooming, flower stem length, flower diameter, petal number, scent, and bud length of both parents and progenies. The inheritance of these traits was evaluated through theoretical evaluations, including calculating heterosis and heterobeltiosis and determining narrow-sense heritability. The combinations and examined traits were assessed using a hierarchical clustering heat map. The results of this study indicated that flower stem length, flower diameter, petal number, and bud length traits had a moderate degree of narrow-sense heritability, suggesting the influence of non-additive genes on these traits. This study observed a low success rate in obtaining progenies with scent in cross combinations between cut roses and old garden roses, indicating the challenges in obtaining scented genotypes. The discrepancy between the observed phenotypic rates and the expected phenotypic and genotypic rates, according to Punnett squares, suggests that the examined traits could be controlled by polygenic genes. The progenies were observed to exhibit a greater resemblance to old garden roses than hybrid tea roses and did not meet the commercial quality standards for cut flowers. The significant negative heterosis observed in 65.12% (petal number) and 99.61% (flower diameter) of the progenies provides strong evidence of resemblance to old garden roses. Considering these findings, it is recommended to consider old garden roses as parents, taking into account their suitability for other breeding objectives.

Project description:The success of rose breeding programs is low due to poor seed sets and germination rates. Determining fertile parents and cross combinations that show high compatibility could increase the effectiveness of breeding programs. In this study, three rose varieties belonging to Rosa × hybrida (Jumilia, First Red and Magnum), and two old garden rose species (Black Rose and Cabbage Rose) with known ploidy levels were reciprocally crossbred under controlled conditions to determine the successful crosses by checking fertility. The pollen germination rate (PG), crossability rate (CR), seed number per fruit (SNpF), seed production efficiency (SPE), seed germination rate (SGR), fruit weight (FW), seed weight (SW) and stigma number (SiN), etc. were recorded. Comprehensive fertility index value was calculated. Principal component analysis (PCA), correlation matrix, and hierarchical heat map were used to evaluate the data. The findings showed that old garden roses had more viable pollen than hybrid tea roses. The crossing success improved as pollen fertility increased. Also, female parent fertility improved crossing success just as much as pollen fertility. Although the pollen fertility and stigma numbers were low, some combinations had higher CR and SPE. The maximum SPE (from 8.67% to 19.46%) was determined in combinations where Black Rose was the female parent despite the lower stigma number and low pollen fertility. The highest CR was recorded in Black Rose × First Red (94.36%). All combinations in which Black Rose was used as the female parent had a more stable CR. The SNpF of combinations where hybrid rose varieties were female parents and old garden roses were pollen parents was higher than other combinations where hybrid rose varieties were both female and pollen parents. The SPE in intraspecific crosses was lower than that obtained from interspecific crosses. Moreover, the SGR decreased in combinations that produced heavier seeds. The results suggested that SPE is a more accurate parameter than SNpF in demonstrating combination success in breeding programs. Black Rose × First Red, Black Rose × Jumilia, Black Rose × Magnum and Black Rose × Cabbage Rose combinations can be used successfully as the PCA and heat map showed. Black Rose showed better performance as both seed and pollen parents according to the comprehensive fertility index. From the correlation matrix, it is understood that the number of stigmas cannot be an important criterion in parent selection. Old garden roses can be used as parents to increase the success of breeding programs. However, it is necessary to reveal how successful they are in transferring desired characteristics such as scent, petal number, and color.

Dataset Information

Detection of Reproducible Major Effect QTL for Petal Traits in Garden Roses.

Publications

Detection of Reproducible Major Effect QTL for Petal Traits in Garden Roses.

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