RNANet: an automatically built dual-source dataset integrating homologous sequences and RNA structures.

ABSTRACT:

Motivation

Applied research in machine learning progresses faster when a clean dataset is available and ready to use. Several datasets have been proposed and released over the years for specific tasks such as image classification, speech-recognition and more recently for protein structure prediction. However, for the fundamental problem of RNA structure prediction, information is spread between several databases depending on the level we are interested in: sequence, secondary structure, 3D structure or interactions with other macromolecules. In order to speed-up advances in machine-learning based approaches for RNA secondary and/or 3D structure prediction, a dataset integrating all this information is required, to avoid spending time on data gathering and cleaning.

Results

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SUBMITTER: Becquey L 

PROVIDER: S-EPMC8189678 | biostudies-literature | 2021 Jun

REPOSITORIES: biostudies-literature