Dataset Information

Intracounty modeling of COVID-19 infection with human mobility: Assessing spatial heterogeneity with business traffic, age, and race.

ABSTRACT: The COVID-19 pandemic is a global threat presenting health, economic, and social challenges that continue to escalate. Metapopulation epidemic modeling studies in the susceptible-exposed-infectious-removed (SEIR) style have played important roles in informing public health policy making to mitigate the spread of COVID-19. These models typically rely on a key assumption on the homogeneity of the population. This assumption certainly cannot be expected to hold true in real situations; various geographic, socioeconomic, and cultural environments affect the behaviors that drive the spread of COVID-19 in different communities. What's more, variation of intracounty environments creates spatial heterogeneity of transmission in different regions. To address this issue, we develop a human mobility flow-augmented stochastic SEIR-style epidemic modeling framework with the ability to distinguish different regions and their corresponding behaviors. This modeling framework is then combined with data assimilation and machine learning techniques to reconstruct the historical growth trajectories of COVID-19 confirmed cases in two counties in Wisconsin. The associations between the spread of COVID-19 and business foot traffic, race and ethnicity, and age structure are then investigated. The results reveal that, in a college town (Dane County), the most important heterogeneity is age structure, while, in a large city area (Milwaukee County), racial and ethnic heterogeneity becomes more apparent. Scenario studies further indicate a strong response of the spread rate to various reopening policies, which suggests that policy makers may need to take these heterogeneities into account very carefully when designing policies for mitigating the ongoing spread of COVID-19 and reopening.

SUBMITTER: Hou X

PROVIDER: S-EPMC8214685 | biostudies-literature | 2021 Jun

REPOSITORIES: biostudies-literature

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Intracounty modeling of COVID-19 infection with human mobility: Assessing spatial heterogeneity with business traffic, age, and race.

Hou Xiao X Gao Song S Li Qin Q Kang Yuhao Y Chen Nan N Chen Kaiping K Rao Jinmeng J Ellenberg Jordan S JS Patz Jonathan A JA

Proceedings of the National Academy of Sciences of the United States of America 20210601 24

The COVID-19 pandemic is a global threat presenting health, economic, and social challenges that continue to escalate. Metapopulation epidemic modeling studies in the susceptible-exposed-infectious-removed (SEIR) style have played important roles in informing public health policy making to mitigate the spread of COVID-19. These models typically rely on a key assumption on the homogeneity of the population. This assumption certainly cannot be expected to hold true in real situations; various geog ...[more]

PMID: 34049993

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Project description:BackgroundIn the context of environmentally influenced communicable diseases, proximity to environmental sources results in spatial heterogeneity of risk, which is sometimes difficult to measure in the field. Most prevention trials use randomization to achieve comparability between groups, thus failing to account for heterogeneity. This study aimed to determine under what conditions spatial heterogeneity biases the results of randomized prevention trials, and to compare different approaches to modeling this heterogeneity.MethodsUsing the example of a malaria prevention trial, simulations were performed to quantify the impact of spatial heterogeneity and to compare different models. Simulated scenarios combined variation in baseline risk, a continuous protective factor (age), a non-related factor (sex), and a binary protective factor (preventive treatment). Simulated spatial heterogeneity scenarios combined variation in breeding site density and effect, location, and population density. The performances of the following five statistical models were assessed: a non-spatial Cox Proportional Hazard (Cox-PH) model and four models accounting for spatial heterogeneity-i.e., a Data-Generating Model, a Generalized Additive Model (GAM), and two Stochastic Partial Differential Equation (SPDE) models, one modeling survival time and the other the number of events. Using a Bayesian approach, we estimated the SPDE models with an Integrated Nested Laplace Approximation algorithm. For each factor (age, sex, treatment), model performances were assessed by quantifying parameter estimation biases, mean square errors, confidence interval coverage rates (CRs), and significance rates. The four models were applied to data from a malaria transmission blocking vaccine candidate.ResultsThe level of baseline risk did not affect our estimates. However, with a high breeding site density and a strong breeding site effect, the Cox-PH and GAM models underestimated the age and treatment effects (but not the sex effect) with a low CR. When population density was low, the Cox-SPDE model slightly overestimated the effect of related factors (age, treatment). The two SPDE models corrected the impact of spatial heterogeneity, thus providing the best estimates.ConclusionOur results show that when spatial heterogeneity is important but not measured, randomization alone cannot achieve comparability between groups. In such cases, prevention trials should model spatial heterogeneity with an adapted method.Trial registrationThe dataset used for the application example was extracted from Vaccine Trial #NCT02334462 ( ClinicalTrials.gov registry).

Project description:Dynamic and flexible systems offer huge advantages for businesses in addressing dynamic uncertain factors and implementing dynamic business processes (DBP). However, DBP remains a challenge from the perspectives of modeling, simulation, and implementation because of a nontrivial understanding of "What is a dynamic business process?" A variety of approaches for DBP modeling and implementation have been proposed over the past years, yet few comprehensive studies analyzing DBP from different particular perspectives (e.g., business process (BP) variability, aspect oriented BP, service compositions, etc.) and research questions that lay the foundation for the development of a meaning of a DBP have been reported. The motivation behind this review is to examine DBP meaning from a global perspective and, consequently, answer the previously presented research question. Therefore, in this paper, we present a systematic literature review (SLR) comprised of 67 papers from five respective digital libraries, which index Computer Science (CS), Information Systems (IS), and Software Engineering (SE) journals and conference proceedings. Two points of view are analyzed in the selected papers. First, we observe the similarities and differences between the proposed approaches to DBP modeling and implementation. From these observations, we define six main requirements for DBP (DBPR). In addition, the comparison of the selected papers according to DBPR shows that most of the approaches analyzed limit BP dynamicity, since they use partially predefined BP models. Secondly, we analyze the papers based on a visualization perspective that shows the less explored areas as follows: more flexible process modeling approach and its implementation in IS should be developed; usage of historic data should be extended; domain knowledge usage, like goal-orientation, multi-criteria optimization, domain knowledge, artificial intelligence, etc., should be included and extended to ensure BP dynamicity. As such, this study makes important contributions and serves as a useful resource for future DBP studies and practice. Moreover, we expect that our results could inspire researchers and practitioners towards further work aimed at bringing forward the field of DBP modeling and implementation.

Dataset Information

Intracounty modeling of COVID-19 infection with human mobility: Assessing spatial heterogeneity with business traffic, age, and race.

Publications

Intracounty modeling of COVID-19 infection with human mobility: Assessing spatial heterogeneity with business traffic, age, and race.

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