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Protocol to analyze circulating small non-coding RNAs by high-throughput RNA sequencing from human plasma samples.


ABSTRACT: The identification and validation of circulating small non-coding RNA (sncRNA) as biomarkers for disease diagnosis, staging, and response to novel therapies is still a compelling challenge. Pre-analytical variables, such as storage temperature or blood hemolysis, and different analytical approaches affect sncRNA stability, detection, and expression, resulting in discrepancies among studies. Here, we report a systematic standardized protocol to reproducibly analyze circulating sncRNAs, employing high-throughput sncRNA sequencing and qRT-PCR validation, from 200 μL of human plasma samples. For details on the use and execution of this protocol, please refer to Ventriglia et al. (2020), Sebastiani et al. (2017), and Dotta et al. (2018).

SUBMITTER: Grieco GE 

PROVIDER: S-EPMC8219884 | biostudies-literature | 2021 Sep

REPOSITORIES: biostudies-literature

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Protocol to analyze circulating small non-coding RNAs by high-throughput RNA sequencing from human plasma samples.

Grieco Giuseppina E GE   Sebastiani Guido G   Fignani Daniela D   Brusco Noemi N   Nigi Laura L   Formichi Caterina C   Licata Giada G   Bruttini Marco M   D'Aurizio Romina R   Mathieu Chantal C   Gysemans Conny C   Dotta Francesco F  

STAR protocols 20210615 3


The identification and validation of circulating small non-coding RNA (sncRNA) as biomarkers for disease diagnosis, staging, and response to novel therapies is still a compelling challenge. Pre-analytical variables, such as storage temperature or blood hemolysis, and different analytical approaches affect sncRNA stability, detection, and expression, resulting in discrepancies among studies. Here, we report a systematic standardized protocol to reproducibly analyze circulating sncRNAs, employing  ...[more]

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