Compi: a framework for portable and reproducible pipelines.

ABSTRACT: Compi is an application framework to develop end-user, pipeline-based applications with a primary emphasis on: (i) user interface generation, by automatically generating a command-line interface based on the pipeline specific parameter definitions; (ii) application packaging, with compi-dk, which is a version-control-friendly tool to package the pipeline application and its dependencies into a Docker image; and (iii) application distribution provided through a public repository of Compi pipelines, named Compi Hub, which allows users to discover, browse and reuse them easily. By addressing these three aspects, Compi goes beyond traditional workflow engines, having been specially designed for researchers who want to take advantage of common workflow engine features (such as automatic job sch

SUBMITTER: Lopez-Fernandez H 

PROVIDER: S-EPMC8237318 | biostudies-literature | 2021

REPOSITORIES: biostudies-literature