Translation of continuous artificial selection on phenotype into genotype during rice breeding programs.

ABSTRACT: Understanding genetic diversity among local populations is a primary goal of modern crop breeding programs. Here, we demonstrated the genetic relationships of rice varieties in Hokkaido, Japan, one of the northern limits of rice cultivation around the world. Furthermore, artificial selection during rice breeding programs has been characterized using genome sequences. We utilized 8,565 single nucleotide polymorphisms and insertion/deletion markers distributed across the genome in genotype-by-sequencing for genetic diversity analyses. Phylogenetics, genetic population structure, and principal component analysis showed that a total of 110 varieties were classified into four distinct clusters according to different populations geographically and historically. Furthermore, the genome sequences

SUBMITTER: Fujino K 

PROVIDER: S-EPMC8329892 | biostudies-literature | 2021 Apr

REPOSITORIES: biostudies-literature