Arabidopsis Coexpression Tool: a tool for gene coexpression analysis in Arabidopsis thaliana.

ABSTRACT: Gene coexpression analysis refers to the discovery of sets of genes which exhibit similar expression patterns across multiple transcriptomic data sets, such as microarray experiment data of public repositories. Arabidopsis Coexpression Tool (ACT), a gene coexpression analysis web tool for Arabidopsis thaliana, identifies genes which are correlated to a driver gene. Primary microarray data from ATH1 Affymetrix platform were processed with Single-Channel Array Normalization algorithm and combined to produce a coexpression tree which contains ∼21,000 A. thaliana genes. ACT was developed to present subclades of coexpressed genes, as well as to perform gene set enrichment analysis, being unique in revealing enriched transcription factors targeting coexpressed genes. ACT off

SUBMITTER: Zogopoulos VL 

PROVIDER: S-EPMC8334378 | biostudies-literature | 2021 Aug

REPOSITORIES: biostudies-literature