Tracking the introduction and spread of SARS-CoV-2 in coastal Kenya.

ABSTRACT: Genomic surveillance of SARS-CoV-2 is important for understanding both the evolution and the patterns of local and global transmission. Here, we generated 311 SARS-CoV-2 genomes from samples collected in coastal Kenya between 17^th March and 31^st July 2020. We estimated multiple independent SARS-CoV-2 introductions into the region were primarily of European origin, although introductions could have come through neighbouring countries. Lineage B.1 accounted for 74% of sequenced cases. Lineages A, B and B.4 were detected in screened individuals at the Kenya-Tanzania border or returning travellers. Though multiple lineages were introduced into coastal Kenya following the initial confirmed case, none showed extensive local expansion other than lineage B.1. International po

SUBMITTER: Githinji G 

PROVIDER: S-EPMC8355311 | biostudies-literature | 2021 Aug

REPOSITORIES: biostudies-literature