SBML Level 3: an extensible format for the exchange and reuse of biological models.

ABSTRACT: Systems biology has experienced dramatic growth in the number, size, and complexity of computational models. To reproduce simulation results and reuse models, researchers must exchange unambiguous model descriptions. We review the latest edition of the Systems Biology Markup Language (SBML), a format designed for this purpose. A community of modelers and software authors developed SBML Level 3 over the past decade. Its modular form consists of a core suited to representing reaction-based models and packages that extend the core with features suited to other model types including constraint-based models, reaction-diffusion models, logical network models, and rule-based models. The format leverages two decades of SBML and a rich software ecosystem that transformed how systems biologists buil

SUBMITTER: Keating SM 

PROVIDER: S-EPMC8411907 | biostudies-literature | 2020 Aug

REPOSITORIES: biostudies-literature