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Recovering genotypes and phenotypes using allele-specific genes.


ABSTRACT: With the recent increase in RNA sequencing efforts using large cohorts of individuals, surveying allele-specific gene expression is becoming increasingly frequent. Here, we report that, despite not containing explicit variant information, a list of genes known to be allele-specific in an individual is enough to recover key variants and link the individuals back to their genotypes and phenotypes. This creates a privacy conundrum.

SUBMITTER: Gursoy G 

PROVIDER: S-EPMC8425091 | biostudies-literature | 2021 Sep

REPOSITORIES: biostudies-literature

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Recovering genotypes and phenotypes using allele-specific genes.

Gürsoy Gamze G   Lu Nancy N   Wagner Sarah S   Gerstein Mark M  

Genome biology 20210907 1


With the recent increase in RNA sequencing efforts using large cohorts of individuals, surveying allele-specific gene expression is becoming increasingly frequent. Here, we report that, despite not containing explicit variant information, a list of genes known to be allele-specific in an individual is enough to recover key variants and link the individuals back to their genotypes and phenotypes. This creates a privacy conundrum. ...[more]

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