TRAPID 2.0: a web application for taxonomic and functional analysis of de novo transcriptomes.

ABSTRACT: Advances in high-throughput sequencing have resulted in a massive increase of RNA-Seq transcriptome data. However, the promise of rapid gene expression profiling in a specific tissue, condition, unicellular organism or microbial community comes with new computational challenges. Owing to the limited availability of well-resolved reference genomes, de novo assembled (meta)transcriptomes have emerged as popular tools for investigating the gene repertoire of previously uncharacterized organisms. Yet, despite their potential, these datasets often contain fragmented or contaminant sequences, and their analysis remains difficult. To alleviate some of these challenges, we developed TRAPID 2.0, a web application for the fast and efficient processing of assembled transcriptome data. The initial pro

SUBMITTER: Bucchini F 

PROVIDER: S-EPMC8464036 | biostudies-literature | 2021 Sep

REPOSITORIES: biostudies-literature