Ribitol in Solution Is an Equilibrium of Asymmetric Conformations.

ABSTRACT: Ribitol (C₅H₁₂O₅), an acyclic sugar alcohol, is present on mammalian α-dystroglycan as a component of O-mannose glycan. In this study, we examine the conformation and dynamics of ribitol by database analysis, experiments, and computational methods. Database analysis reveals that the anti-conformation (180°) is populated at the C3-C4 dihedral angle, while the gauche conformation (±60°) is seen at the C2-C3 dihedral angle. Such conformational asymmetry was born out in a solid-state ¹³C-NMR spectrum of crystalline ribitol, where C1 and C5 signals are unequal. On the other hand, solution ¹³C-NMR has identical chemical shifts for C1 and C5. NMR ³J coupling constants and OH exchange rates suggest that ribitol is an equilibrium of conformations, under the influence of hydrogen bonds and/or steric hinderance. Molecular dynamics (MD) simulations allowed us to discuss such a chemically symmetric molecule, pinpointing the presence of asymmetric conformations evidenced by the presence of correlations between C2-C3 and C3-C4 dihedral angles. These findings provide a basis for understanding the dynamic structure of ribitol and the function of ribitol-binding enzymes.

SUBMITTER: Ohno S 

PROVIDER: S-EPMC8468352 | biostudies-literature |

REPOSITORIES: biostudies-literature