Productive visualization of high-throughput sequencing data using the SeqCode open portable platform.

ABSTRACT: Large-scale sequencing techniques to chart genomes are entirely consolidated. Stable computational methods to perform primary tasks such as quality control, read mapping, peak calling, and counting are likewise available. However, there is a lack of uniform standards for graphical data mining, which is also of central importance. To fill this gap, we developed SeqCode, an open suite of applications that analyzes sequencing data in an elegant but efficient manner. Our software is a portable resource written in ANSI C that can be expected to work for almost all genomes in any computational configuration. Furthermore, we offer a user-friendly front-end web server that integrates SeqCode functions with other graphical analysis tools. Our analysis and visualization toolkit represents a signific

SUBMITTER: Blanco E 

PROVIDER: S-EPMC8486768 | biostudies-literature | 2021 Oct

REPOSITORIES: biostudies-literature