OnTheFly^2.0: a text-mining web application for automated biomedical entity recognition, document annotation, network and functional enrichment analysis.

ABSTRACT: Extracting and processing information from documents is of great importance as lots of experimental results and findings are stored in local files. Therefore, extracting and analyzing biomedical terms from such files in an automated way is absolutely necessary. In this article, we present OnTheFly^2.0, a web application for extracting biomedical entities from individual files such as plain texts, office documents, PDF files or images. OnTheFly^2.0 can generate informative summaries in popup windows containing knowledge related to the identified terms along with links to various databases. It uses the EXTRACT tagging service to perform named entity recognition (NER) for genes/proteins, chemical compounds, organisms, tissues, environments, diseases, phenotypes and gene on

SUBMITTER: Baltoumas FA 

PROVIDER: S-EPMC8494211 | biostudies-literature | 2021 Dec

REPOSITORIES: biostudies-literature