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The complete chloroplast genome of Carex agglomerata C. B. Clarke (Cyperaceae), an endemic species from China.

ABSTRACT: Carex agglomerata C. B. Clarke is a sedge with excellent ornamental characters, it is an important ecosystem stabilizer. Here we report the complete chloroplast genome of C. agglomerata to provide a foundation for further phylogenetic studies on the Cyperaceae. The chloroplast (cp) genome is 184,157 bp in size and consists of a large single-copy (LSC) region 106,654 bp in length, a small single-copy (SSC) region of 36,099 bp, two inverted repeats (IR) regions each 20,702 bp. The total GC content of the cp genome is 33.9% with the LSC, SSC, and IR regions 32, 32.5, and 42.9%, respectively. The cp genome contains 128 genes, including 80 protein-coding, 40 tRNA, and eight rRNA genes. The phylogenetic analysis showed C. agglomerata is in a clade with Carex neurocarpa Maxim and Carex siderosticta Hance. This study provides a basis for further phylogenetic studies of Carex.

SUBMITTER: Xun LL 

PROVIDER: S-EPMC8510598 | biostudies-literature | 2021

REPOSITORIES: biostudies-literature

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The complete chloroplast genome of <i>Carex agglomerata</i> C. B. Clarke (Cyperaceae), an endemic species from China.

Xun Lu-Lu LL   Ding Fang-Bin FB   Chen Chen C   Liu Pei-Liang PL   Lu Yuan Y   Zhou Ya-Fu YF   Zhang Ya-Wei YW   Li Si-Feng SF  

Mitochondrial DNA. Part B, Resources 20211005 11

<i>Carex agglomerata</i> C. B. Clarke is a sedge with excellent ornamental characters, it is an important ecosystem stabilizer. Here we report the complete chloroplast genome of <i>C. agglomerata</i> to provide a foundation for further phylogenetic studies on the Cyperaceae. The chloroplast (cp) genome is 184,157 bp in size and consists of a large single-copy (LSC) region 106,654 bp in length, a small single-copy (SSC) region of 36,099 bp, two inverted repeats (IR) regions each 20,702 bp. The to  ...[more]

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