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Characterization of the complete chloroplast genome of Actinidia hemsleyana.

ABSTRACT: The completed chloroplast genome sequence of Actinidia hemsleyana, collected from eastern China, was firstly determined using next-generation sequencing (NGS) and bioinformatic analysis. The length of cp genome was 156,845 bp, including a large single-copy (LSC) region of 88,666 bp and a small single-copy (SSC) region of 20,543 bp, which were separated by a pair of inverted repeats (IRs) of 23,818 bp. The cp genome contained 132 genes, including 83 protein-coding genes, 41 tRNA genes, and 8 rRNA genes. The overall GC content was 37.19%, whereas the corresponding values of the LSC, SSC, and IR regions were 35.46%, 31.09%, and 43.06%, respectively. Phylogenetic analysis based on whole cp genome sequences of 20 Actinidia species showed that A. hemsleyana has the closest relationship with A.latifolia.

SUBMITTER: Xiaoqiong Q

PROVIDER: S-EPMC8530474 | biostudies-literature | 2021

REPOSITORIES: biostudies-literature

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Characterization of the complete chloroplast genome of Actinidia hemsleyana.

Xiaoqiong Qi Q Xiaodong Xie X Mingjuan Yang Y Atak Arif A Caihong Zhong Z Dawei Li L

Mitochondrial DNA. Part B, Resources 20211020 11

The completed chloroplast genome sequence of Actinidia hemsleyana, collected from eastern China, was firstly determined using next-generation sequencing (NGS) and bioinformatic analysis. The length of cp genome was 156,845 bp, including a large single-copy (LSC) region of 88,666 bp and a small single-copy (SSC) region of 20,543 bp, which were separated by a pair of inverted repeats (IRs) of 23,818 bp. The cp genome contained 132 genes, including 83 protein-coding genes, 41 tRNA genes, and ...[more]

PMID: 34693017

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